5Y2S

7.0 atm CO2-pressurized human carbonic anhydrase II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.9 Å
  • R-Value Free: 0.127 
  • R-Value Work: 0.112 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Active-site solvent replenishment observed during human carbonic anhydrase II catalysis.

Kim, J.K.Lomelino, C.L.Avvaru, B.S.Mahon, B.P.McKenna, R.Park, S.Kim, C.U.

(2018) IUCrJ 5: 93-102


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Carbonic anhydrase 2
A
260Homo sapiensMutation(s): 0 
Gene Names: CA2
EC: 4.2.1.1
Find proteins for P00918 (Homo sapiens)
Go to Gene View: CA2
Go to UniProtKB:  P00918
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CO2
Query on CO2

Download SDF File 
Download CCD File 
A
CARBON DIOXIDE
C O2
CURLTUGMZLYLDI-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.9 Å
  • R-Value Free: 0.127 
  • R-Value Work: 0.112 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 42.305α = 90.00
b = 41.365β = 104.12
c = 71.944γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
PHASERphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-07-27 
  • Released Date: 2018-02-14 
  • Deposition Author(s): Kim, C.U., Park, S.Y.

Funding OrganizationLocationGrant Number
National Research Foundation of KoreaKorea, Republic Of2014R1A2A1A11051254
National Research Foundation of KoreaKorea, Republic Of2016R1A5A1013277
National Research Foundation of KoreaKorea, Republic Of2016R1D1A1A09918187

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release