5WRJ

Crystal structure of human tyrosylprotein sulfotransferase-1 complexed with PAP and gastrin peptide

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.241 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history. 

Literature

Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1.

Tanaka, S., Nishiyori, T., Kojo, H., Otsubo, R., Tsuruta, M., Kurogi, K., Liu, M.C., Suiko, M., Sakakibara, Y., Kakuta, Y.

(2017) Sci Rep 7: 8776-8776

  • DOI: 10.1038/s41598-017-07141-8
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • Tyrosylprotein sulfotransferases (TPSTs) are enzymes that catalyze post-translational tyrosine sulfation of proteins. In humans, there are only two TPST isoforms, designated TPST1 and TPST2. In a previous study, we reported the crystal structure of T ...

    Tyrosylprotein sulfotransferases (TPSTs) are enzymes that catalyze post-translational tyrosine sulfation of proteins. In humans, there are only two TPST isoforms, designated TPST1 and TPST2. In a previous study, we reported the crystal structure of TPST2, which revealed the catalytic mechanism of the tyrosine sulfation reaction. However, detailed molecular mechanisms underlying how TPSTs catalyse a variety of substrate proteins with different efficiencies and how TPSTs catalyze the sulfation of multiple tyrosine residues in a substrate protein remain unresolved. Here, we report two crystal structures of the human TPST1 complexed with two substrate peptides that are catalysed by human TPST1 with significantly different efficiencies. The distinct binding modes found in the two complexes provide insight into the sulfation mechanism for these substrates. The present study provides valuable information describing the molecular mechanism of post-translational protein modifications catalysed by TPSTs.

    Organizational Affiliation: 

    Department of Bioscience and Biotechnology, Faculty of Agriculture, Kyushu University, Hakozaki 6-10-1, Fukuoka, 812-8581, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein-tyrosine sulfotransferase 1
A, B, C, D
303Homo sapiensMutation(s): 0 
Gene Names: TPST1
EC: 2.8.2.20
Find proteins for O60507 (Homo sapiens)
Go to Gene View: TPST1
Go to UniProtKB:  O60507
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
gastrin peptide
F, H, J, L
12Homo sapiensMutation(s): 0 
Gene Names: GAST (GAS)
Find proteins for P01350 (Homo sapiens)
Go to Gene View: GAST
Go to UniProtKB:  P01350
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A3P
Query on A3P
Download SDF File 
Download CCD File 
A, B, C, D
ADENOSINE-3'-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
WHTCPDAXWFLDIH-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG
Download SDF File 
Download CCD File 
A, B, C, D
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.241 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 51.668α = 90.60
b = 93.263β = 93.39
c = 93.012γ = 103.39
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
MOLREPphasing
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-09-06
    Type: Initial release