Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - AB 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 44706.68 
• Atom Count: 3204 
• Residue Count: 385 
• Unique protein chains: 3

5VWH

HLA-B*58:01 presenting LSSPVTKSW

• DOI: 10.2210/pdb5VWH/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21


• Deposited: 2017-05-21 Released: 2018-10-03 
• Deposition Author(s): Pymm, P., Rossjohn, J., Vivian, J.P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.648 Å
• R-Value Free: 0.199 
• R-Value Work: 0.167 

Literature

HLA-B*58:01 presenting LSSPVTKSW

Pymm, P., Rossjohn, J., Vivian, J.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
HLA class I histocompatibility antigen, B-58 alpha chain	A	276	Homo sapiens	Mutation(s): 0  Gene Names: HLA-B (HLAB)
Find proteins for P10319 (Homo sapiens) Go to Gene View: HLA-B Go to UniProtKB:  P10319

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Beta-2-microglobulin	B	100	Homo sapiens	Mutation(s): 0  Gene Names: B2M
Find proteins for P61769 (Homo sapiens) Go to Gene View: B2M Go to UniProtKB:  P61769

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
Nonamer peptide: LEU-SER-SER-PRO-VAL-THR-LYS-SER-TRP	C	9	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.648 Å
• R-Value Free: 0.199 
• R-Value Work: 0.167 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 51.174	α = 90.00
b = 81.773	β = 90.00
c = 109.148	γ = 90.00

Software Package:

Software Name	Purpose
PHASER	phasing
MOSFLM	data reduction
PHENIX	refinement
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2017-05-21 
• Released Date: 2018-10-03 
• Deposition Author(s): Pymm, P., Rossjohn, J., Vivian, J.P.

Revision History 

• Version 1.0: 2018-10-03
  Type: Initial release