5V8T

Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.187 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354

Lorimer, D.D.Dranow, D.M.Seufert, F.Abendroth, J.Holzgrabe, U.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase
A, B
208Saccharomyces cerevisiae S288CBurkholderia pseudomallei
This entity is chimeric
Mutation(s): 0 
Gene Names: SMT3YDR510WD9719.15fbp_2DP46_4351DP49_3058ERS012314_03208SY87_03945
EC: 5.2.1.8
UniProt
Find proteins for Q63J95 (Burkholderia pseudomallei (strain K96243))
Explore Q63J95 
Go to UniProtKB:  Q63J95
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12306 
Go to UniProtKB:  Q12306
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ12306Q63J95
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.64α = 90
b = 32.5β = 96.73
c = 99.35γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 1.1: 2020-01-15
    Changes: Data collection
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Derived calculations, Refinement description