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Rizkallah, P.J., Tungatt, K., Sewell, A.K.To be published.
5NQ1
Porcine (Sus scrofa) Major Histocompatibility Complex, class I, with human beta2 micro globulin, presenting DFEREGYSL
- DOI: 10.2210/pdb5NQ1/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Sus scrofa, Homo sapiens, Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd)
- Expression System: Escherichia coli
- Deposited: 2017-04-19 Released: 2018-04-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.14 Å
- R-Value Free: 0.283
- R-Value Work: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| MHC class I antigen | A, D | 276 | Sus scrofa | Mutation(s): 0 Gene Names: SLA-1 |
Find proteins for B1PJV3 (Sus scrofa) Go to UniProtKB: B1PJV3 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Beta-2-microglobulin | B, E | 100 | Homo sapiens | Mutation(s): 0 Gene Names: B2M |
Find proteins for P61769 (Homo sapiens) Go to Gene View: B2M Go to UniProtKB: P61769 | ||||
Entity ID: 3 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| ASP-PHE-GLU-ARG-GLU-GLY-TYR-SER-LEU | C, F | 9 | Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) | Mutation(s): 0 Gene Names: NP |
Find proteins for Q9Q0U8 (Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd)) Go to UniProtKB: Q9Q0U8 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| GOL Query on GOL | E | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B, E | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.14 Å
- R-Value Free: 0.283
- R-Value Work: 0.220
- Space Group: P 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 59.388 | α = 81.24 |
| b = 60.288 | β = 67.59 |
| c = 65.645 | γ = 67.94 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| Aimless | data scaling |
| xia2 | data reduction |
| PHASER | phasing |
| DIALS | data reduction |
Entry History
Deposition Data
- Deposited Date: 2017-04-19
- Released Date: 2018-04-25
- Deposition Author(s): Rizkallah, P.J., Tungatt, K., Sewell, A.K.
Revision History
- Version 1.0: 2018-04-25
Type: Initial release
