5IRP

Crystal structure of the alanine racemase Bsu17640 from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the alanine racemase Bsu17640 from Bacillus subtilis

Bernardo-Garcia, N.Gago, F.Hermoso, J.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alanine racemase 2
A, B
394Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: alr2 (yncD)
EC: 5.1.1.1
Find proteins for P94494 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P94494
Small Molecules
Ligands 7 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

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A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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A, B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

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A, B
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
UAH
Query on UAH

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A, B
(5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate
4'-deformyl pyidoxal phosphote
C7 H10 N O5 P
CKIPHKBHPIDPOG-UHFFFAOYSA-N
 Ligand Interaction
CO2
Query on CO2

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B
CARBON DIOXIDE
C O2
CURLTUGMZLYLDI-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.154 
  • Space Group: P 43 2 2
Unit Cell:
Length (Å)Angle (°)
a = 72.888α = 90.00
b = 72.888β = 90.00
c = 332.833γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
MOLREPphasing
PHENIXrefinement
Aimlessdata scaling
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-03-29
    Type: Initial release