Download MendeleyCrystal structure of UTP-glucose-1-phosphate uridylyltransferase from Burkholderia vietnamiensis in complex with Uridine-5'-diphosphate-glucose
Abendroth, J., Lorimer, D.D., Edwards, T.E.To be published.
5I1F
Crystal structure of UTP-glucose-1-phosphate uridylyltransferase from Burkholderia vietnamiensis in complex with Uridine-5'-diphosphate-glucose
- PDB DOI: https://doi.org/10.2210/pdb5I1F/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia vietnamiensis G4
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-02-05 Released: 2016-03-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.203
- R-Value Work: 0.172
- R-Value Observed: 0.174
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UTP--glucose-1-phosphate uridylyltransferase | 302 | Burkholderia vietnamiensis G4 | Mutation(s): 0 Gene Names: Bcep1808_6508 EC: 2.7.7.9 |  | |
UniProt | |||||
Find proteins for A4JT02 (Burkholderia vietnamiensis (strain G4 / LMG 22486)) Explore A4JT02 Go to UniProtKB: A4JT02 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A4JT02 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UPG Query on UPG | B [auth A] | URIDINE-5'-DIPHOSPHATE-GLUCOSE C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-JZMIEXBBSA-N |  | ||
| CL Query on CL | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | C [auth A], D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.203
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 62 2 2
- Diffraction Data: https://doi.org/10.18430/M35I1F
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.9 | α = 90 |
| b = 84.9 | β = 90 |
| c = 252.7 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | model building |
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2016-03-02 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2016-03-02
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
