5HGA

HLA*A2402 complex with HIV nef138 Y2F-8mer mutant epitope


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.199 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Effects of a Single Escape Mutation on T Cell and HIV-1 Co-adaptation

Sun, X.Shi, Y.Akahoshi, T.Fujiwara, M.Gatanaga, H.Schonbach, C.Kuse, N.Appay, V.Gao, G.F.Oka, S.Takiguchi, M.

(2016) Cell Rep 15: 1-13


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, A-24 alpha chain
A, D
275Homo sapiensMutation(s): 0 
Gene Names: HLA-A (HLAA)
Find proteins for P05534 (Homo sapiens)
Go to Gene View: HLA-A
Go to UniProtKB:  P05534
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, E
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
8-mer from Protein Nef
C, F
8Human immunodeficiency virus type 1 group M subtype BMutation(s): 1 
Gene Names: nef
Find proteins for P04601 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P04601
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.199 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.205 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 64.838α = 90.00
b = 86.913β = 90.00
c = 151.441γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement
HKL-2000data reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-08
    Type: Initial release