5E4L

Structure of ligand binding region of uPARAP at pH 5.3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 

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This is version 1.1 of the entry. See complete history


Literature

Crystal structures of uPARAP, a member of mannose receptor family

Yuan, C.Huang, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
C-type mannose receptor 2A, B492Homo sapiensMutation(s): 1 
Gene Names: MRC2CLEC13EENDO180KIAA0709UPARAP
Find proteins for Q9UBG0 (Homo sapiens)
Explore Q9UBG0 
Go to UniProtKB:  Q9UBG0
NIH Common Fund Data Resources
PHAROS:  Q9UBG0
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.27α = 90
b = 102.7β = 94.54
c = 87.76γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data scaling
PDB_EXTRACTdata extraction
xia2data reduction
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-10-06 
  • Released Date: 2016-10-12 
  • Deposition Author(s): Yuan, C., Huang, M.

Funding OrganizationLocationGrant Number
Natural Science Foundation Of ChinaChina31570745

Revision History  (Full details and data files)

  • Version 1.0: 2016-10-12
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary