5E4L | pdb_00005e4l

Structure of ligand binding region of uPARAP at pH 5.3

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5e4lB1	A: Immunoglobulin-like beta-sandwich	X: Immunoglobulin-related	H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	T: CagX	F:	ECOD (20:10:01)
A		e5e4lA1	A: ALDH-like	X: ALDH-like	H: ALDH-like	T: PRP38	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)		CATH (utative)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00040	Fibronectin type II domain (fn2)	Fibronectin type II domain		Domain
A, B	PF24562	MRC2-like, N-terminal cysteine-rich domain (CysR_MRC2_N)	MRC2-like, N-terminal cysteine-rich domain	This cysteine-rich domain is found at the N-terminal end of human C-type mannose receptor 2 (MRC2) and similar proteins from vertebrates. MRC2 internalises glycosylated ligands from the extracellular space for release in an endosomal compartment and ...	This cysteine-rich domain is found at the N-terminal end of human C-type mannose receptor 2 (MRC2) and similar proteins from vertebrates. MRC2 internalises glycosylated ligands from the extracellular space for release in an endosomal compartment and may play a role as endocytotic lectin receptor. It may also be involved in cancer progression as well as in other chronic tissue destructive diseases acting on collagen turnover. This domain is organised into two regions: the N-terminal folds into two lobes similarly to the canonical beta-trefoil structure. The predicted third lobe folds into an alpha-helix followed by a long flexible loop and a beta-strand [1-6].	Domain
A, B	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	C-type mannose receptor 2	binding carbohydrate binding molecular transducer activity signaling receptor activity collagen binding protein-containing complex binding	collagen catabolic process catabolic process metabolic process cellular process collagen metabolic process developmental process multicellular organismal process cellular developmental process ossification cell differentiation osteoblast differentiation localization import into cell transport collagen catabolic process catabolic process metabolic process cellular process collagen metabolic process developmental process multicellular organismal process cellular developmental process ossification cell differentiation osteoblast differentiation localization import into cell transport endocytosis establishment of localization vesicle-mediated transport	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR013806	Kringle-like fold	Homologous Superfamily
A, B	IPR036943	Fibronectin type II domain superfamily	Homologous Superfamily
A, B	IPR016187	C-type lectin fold	Homologous Superfamily
A, B	IPR033989	CD209-like, C-type lectin-like domain	Domain
A, B	IPR001304	C-type lectin-like	Domain
A, B	IPR018378	C-type lectin, conserved site	Conserved Site
A, B	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B	IPR035992	Ricin B-like lectins	Homologous Superfamily
A, B	IPR050111	C-type lectin and snaclec domain-containing protein	Family
A, B	IPR000562	Fibronectin type II domain	Domain
A, B	IPR000772	Ricin B, lectin domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9UBG0	Mammary Neoplasms, Experimental carcinoma sarcomatoid carcinoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor diabetes mellitus malignant ependymoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor undifferentiated carcinoma glioblastoma Mammary Neoplasms, Experimental carcinoma sarcomatoid carcinoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor diabetes mellitus malignant ependymoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor undifferentiated carcinoma glioblastoma malignant glioma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma astrocytic tumor lung carcinoma malignant mesothelioma mammary neoplasms, animal ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.