5DO8
1.8 Angstrom crystal structure of Listeria monocytogenes Lmo0184 alpha-1,6-glucosidase
- PDB DOI: https://doi.org/10.2210/pdb5DO8/pdb
- Classification: HYDROLASE
- Organism(s): Listeria monocytogenes EGD-e
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2015-09-10 Released: 2015-09-30 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.188 
- R-Value Work: 0.154 
- R-Value Observed: 0.155 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Lmo0184 protein | A [auth B], B [auth A], C | 555 | Listeria monocytogenes EGD-e | Mutation(s): 0  Gene Names: lmo0184 | |
UniProt | |||||
Find proteins for Q8YAE6 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8YAE6  Go to UniProtKB:  Q8YAE6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8YAE6 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BTB Query on BTB | F [auth B], I [auth A], M [auth C] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N | |||
BGC Query on BGC | D [auth B], G [auth A], J [auth C] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N | |||
CL Query on CL | E [auth B], H [auth A], K [auth C], L [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.188 
- R-Value Work: 0.154 
- R-Value Observed: 0.155 
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/m35do8
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 88.123 | α = 90 |
b = 103.937 | β = 90 |
c = 193.79 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2015-09-30  Deposition Author(s): Light, S.H., Halavaty, A.S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2015-09-30
Type: Initial release - Version 1.1: 2016-11-23
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description, Structure summary