Crystal structure of D-alanine-D-alanine ligase from Burkholderia xenovorans

Experimental Data Snapshot

  • Resolution: 2.3 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.224 

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history


Combining functional and structural genomics to sample the essential Burkholderia structome.

Baugh, L.Gallagher, L.A.Patrapuvich, R.Clifton, M.C.Gardberg, A.S.Edwards, T.E.Armour, B.Begley, D.W.Dieterich, S.H.Dranow, D.M.Abendroth, J.Fairman, J.W.Fox, D.Staker, B.L.Phan, I.Gillespie, A.Choi, R.Nakazawa-Hewitt, S.Nguyen, M.T.Napuli, A.Barrett, L.Buchko, G.W.Stacy, R.Myler, P.J.Stewart, L.J.Manoil, C.Van Voorhis, W.C.

(2013) Plos One 8: e53851-e53851


Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-alanine--D-alanine ligase
A, B, C, D
334Paraburkholderia xenovorans (strain LB400)Mutation(s): 0 
Gene Names: ddl
Find proteins for Q13TZ4 (Paraburkholderia xenovorans (strain LB400))
Go to UniProtKB:  Q13TZ4
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 78.930α = 90.00
b = 78.930β = 90.00
c = 224.740γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
JDirectordata collection

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-07-18
    Type: Initial release
  • Version 1.1: 2013-10-30
    Type: Database references
  • Version 1.2: 2018-01-24
    Type: Structure summary