4ZIN

Genetically encoded Phenyl Azide Photochemistry Drive Positive and Negative Functional Modulation of a Red Fluorescent Protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Genetically encoded phenyl azide photochemistry drives positive and negative functional modulation of a red fluorescent protein

Reddington, S.C.Driezis, S.Hartley, A.M.Watson, P.D.Rizkallah, P.J.Jones, D.D.

(2015) Rsc Adv 5: 77734


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MCherry fluorescent protein
A, B, C
219Anaplasma marginaleMutation(s): 0 
Gene Names: mCherry
Find proteins for X5DSL3 (Anaplasma marginale)
Go to UniProtKB:  X5DSL3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
4OO
Query on 4OO
A, B, C
NON-POLYMERC9 H11 N4 O2

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CH6
Query on CH6
A, B, C
L-PEPTIDE LINKINGC16 H19 N3 O4 SMET, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 43.280α = 90.00
b = 103.430β = 90.00
c = 150.720γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHASERphasing
PDB_EXTRACTdata extraction
REFMACrefinement
xia2data reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-09-16
    Type: Initial release
  • Version 1.1: 2018-02-07
    Type: Database references