4Z9G

Crystal structure of human corticotropin-releasing factor receptor 1 (CRF1R) in complex with the antagonist CP-376395 in a hexagonal setting with translational non-crystallographic symmetry

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.183 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.244 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Decoding Corticotropin-Releasing Factor Receptor Type 1 Crystal Structures.

Dore, A.S., Bortolato, A., Hollenstein, K., Cheng, R.K.Y., Read, R.J., Marshall, F.H.

(2017) Curr Mol Pharmacol 10: 334-344

  • DOI: 10.2174/1874467210666170110114727

  • PubMed Abstract: 

    • The structural analysis of class B G protein-coupled receptors (GPCR), cell surface proteins responding to peptide hormones, has until recently been restricted to the extracellular domain (ECD). Corticotropin-releasing factor receptor type 1 (CRF1R) ...

    The structural analysis of class B G protein-coupled receptors (GPCR), cell surface proteins responding to peptide hormones, has until recently been restricted to the extracellular domain (ECD). Corticotropin-releasing factor receptor type 1 (CRF1R) is a class B receptor mediating stress response and also considered a drug target for depression and anxiety. Here we report the crystal structure of the transmembrane domain of human CRF1R in complex with the small-molecule antagonist CP-376395 in a hexagonal setting with translational non-crystallographic symmetry. Molecular dynamics and metadynamics simulations on this novel structure and the existing TMD structure for CRF1R provides insight as to how the small molecule ligand gains access to the induced-fit allosteric binding site with implications for the observed selectivity against CRF2R. Furthermore, molecular dynamics simulations performed using a full-length receptor model point to key interactions between the ECD and extracellular loop 3 of the TMD providing insight into the full inactive state of multidomain class B GPCRs.

    Organizational Affiliation: 

    Heptares Therapeutics Ltd, BioPark, Broadwater Road, Welwyn Garden City, Herts, AL7 3AX. United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Corticotropin-releasing factor receptor 1,Lysozyme,Corticotropin-releasing factor receptor 1
A, B, C
443Enterobacteria phage RB51, Homo sapiens
This entity is chimeric		Mutation(s): 13 
Gene Names: e, CRHR1 (CRFR, CRFR1, CRHR)
EC: 3.2.1.17
Find proteins for C3V2B5 (Enterobacteria phage RB51)
Go to UniProtKB:  C3V2B5
Find proteins for P34998 (Homo sapiens)
Go to Gene View: CRHR1
Go to UniProtKB:  P34998
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4
Download SDF File 
Download CCD File 
A, C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
OLA
Query on OLA
Download SDF File 
Download CCD File 
A, B, C
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
 Ligand Interaction
1Q5
Query on 1Q5
Download SDF File 
Download CCD File 
A, B, C
3,6-dimethyl-N-(pentan-3-yl)-2-(2,4,6-trimethylphenoxy)pyridin-4-amine
C21 H30 N2 O
VIZBSVDBNLAVAW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.183 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.244 
  • Space Group: P 6
Unit Cell:
Length (Å)Angle (°)
a = 189.359α = 90.00
b = 189.359β = 90.00
c = 88.575γ = 120.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-29
    Type: Initial release
  • Version 1.1: 2017-12-06
    Type: Database references