4V9Q

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.40 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.231 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome.

Svidritskiy, E.Ling, C.Ermolenko, D.N.Korostelev, A.A.

(2013) Proc Natl Acad Sci U S A 110: 12283-12288

  • DOI: 10.1073/pnas.1304922110
  • Primary Citation of Related Structures:  
    4V9Q

  • PubMed Abstract: 
  • The antibiotic blasticidin S (BlaS) is a potent inhibitor of protein synthesis in bacteria and eukaryotes. We have determined a 3.4-Å crystal structure of BlaS bound to a 70S⋅tRNA ribosome complex and performed biochemical and single-molecule FRET experiments to determine the mechanism of action of the antibiotic ...

    The antibiotic blasticidin S (BlaS) is a potent inhibitor of protein synthesis in bacteria and eukaryotes. We have determined a 3.4-Å crystal structure of BlaS bound to a 70S⋅tRNA ribosome complex and performed biochemical and single-molecule FRET experiments to determine the mechanism of action of the antibiotic. We find that BlaS enhances tRNA binding to the P site of the large ribosomal subunit and slows down spontaneous intersubunit rotation in pretranslocation ribosomes. However, the antibiotic has negligible effect on elongation factor G catalyzed translocation of tRNA and mRNA. The crystal structure of the antibiotic-ribosome complex reveals that BlaS impedes protein synthesis through a unique mechanism by bending the 3' terminus of the P-site tRNA toward the A site of the large ribosomal subunit. Biochemical experiments demonstrate that stabilization of the deformed conformation of the P-site tRNA by BlaS strongly inhibits peptidyl-tRNA hydrolysis by release factors and, to a lesser extent, peptide bond formation.


    Organizational Affiliation

    RNA Therapeutics Institute, Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L2C [auth AD],
EB [auth CD]
271Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplBTT_C1325
UniProt
Find proteins for Q72I07 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I07 
Go to UniProtKB:  Q72I07
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I07
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L3D [auth AE],
FB [auth CE]
204Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplCTT_C1328
UniProt
Find proteins for Q72I04 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I04 
Go to UniProtKB:  Q72I04
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I04
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L4E [auth AF],
GB [auth CF]
202Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplDTT_C1327
UniProt
Find proteins for Q72I05 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I05 
Go to UniProtKB:  Q72I05
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I05
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L5F [auth AG],
HB [auth CG]
181Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplETT_C1316
UniProt
Find proteins for Q72I16 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I16 
Go to UniProtKB:  Q72I16
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I16
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L6G [auth AH],
IB [auth CH]
159Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplFTT_C1313
UniProt
Find proteins for Q72I19 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I19 
Go to UniProtKB:  Q72I19
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I19
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L9H [auth AI],
JB [auth CI]
145Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplITT_C1743
UniProt
Find proteins for Q72GV5 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72GV5 
Go to UniProtKB:  Q72GV5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72GV5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L13I [auth AJ],
KB [auth CJ]
137Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplMTT_C1101
UniProt
Find proteins for Q72IN1 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72IN1 
Go to UniProtKB:  Q72IN1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72IN1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L14J [auth AK],
LB [auth CK]
122Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplNTT_C1318
UniProt
Find proteins for Q72I14 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I14 
Go to UniProtKB:  Q72I14
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I14
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L15K [auth AL],
MB [auth CL]
146Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplOTT_C1309
UniProt
Find proteins for Q72I23 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I23 
Go to UniProtKB:  Q72I23
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I23
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L16L [auth AM],
NB [auth CM]
134Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplPTT_C1321
UniProt
Find proteins for Q72I11 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I11 
Go to UniProtKB:  Q72I11
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I11
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L17M [auth AN],
OB [auth CN]
117Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplQTT_C1299
UniProt
Find proteins for Q72I33 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I33 
Go to UniProtKB:  Q72I33
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I33
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L18N [auth AO],
PB [auth CO]
98Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplRTT_C1312
UniProt
Find proteins for Q72I20 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I20 
Go to UniProtKB:  Q72I20
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I20
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L19O [auth AP],
QB [auth CP]
137Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplSTT_C0669
UniProt
Find proteins for Q72JU9 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72JU9 
Go to UniProtKB:  Q72JU9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72JU9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L20P [auth AQ],
RB [auth CQ]
117Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplTTT_C0185
UniProt
Find proteins for Q72L76 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72L76 
Go to UniProtKB:  Q72L76
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72L76
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L21Q [auth AR],
SB [auth CR]
101Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplUTT_C1424
UniProt
Find proteins for Q72HR2 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72HR2 
Go to UniProtKB:  Q72HR2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72HR2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L22R [auth AS],
TB [auth CS]
112Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplVTT_C1323
UniProt
Find proteins for Q72I09 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I09 
Go to UniProtKB:  Q72I09
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I09
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23S [auth AT],
UB [auth CT]
92Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplWTT_C1326
UniProt
Find proteins for Q72I06 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I06 
Go to UniProtKB:  Q72I06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I06
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24T [auth AU],
VB [auth CU]
100Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplXTT_C1317
UniProt
Find proteins for Q72I15 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I15 
Go to UniProtKB:  Q72I15
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I15
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25U [auth AV],
WB [auth CV]
187Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplYctcTT_C1225
UniProt
Find proteins for Q72IA7 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72IA7 
Go to UniProtKB:  Q72IA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72IA7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L27V [auth AW],
XB [auth CW]
76Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmATT_C1423
UniProt
Find proteins for Q72HR3 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72HR3 
Go to UniProtKB:  Q72HR3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72HR3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L28W [auth AX],
YB [auth CX]
88Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmBTT_C1964
UniProt
Find proteins for Q72G84 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72G84 
Go to UniProtKB:  Q72G84
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72G84
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L29X [auth AY],
ZB [auth CY]
62Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmCTT_C1320
UniProt
Find proteins for Q72I12 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I12 
Go to UniProtKB:  Q72I12
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I12
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30Y [auth AZ],
AC [auth CZ]
59Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmDTT_C1310
UniProt
Find proteins for Q72I22 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72I22 
Go to UniProtKB:  Q72I22
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72I22
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L31Z [auth A1],
BC [auth C1]
30Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmETT_C0708
UniProt
Find proteins for Q72JR0 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72JR0 
Go to UniProtKB:  Q72JR0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72JR0
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L32AA [auth A2],
CC [auth C2]
52Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmFrpl32TT_C0050
UniProt
Find proteins for P62652 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62652 
Go to UniProtKB:  P62652
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62652
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L33BA [auth A3],
DC [auth C3]
44Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmGTT_C1735
UniProt
Find proteins for Q72GW3 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72GW3 
Go to UniProtKB:  Q72GW3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72GW3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L34CA [auth A4],
EC [auth C4]
48Thermus thermophilus HB27Mutation(s): 0 
UniProt
Find proteins for P80340 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore P80340 
Go to UniProtKB:  P80340
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP80340
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L35DA [auth A5],
FC [auth C5]
63Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmITT_C0184
UniProt
Find proteins for Q72L77 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore Q72L77 
Go to UniProtKB:  Q72L77
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ72L77
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S2FA [auth BB],
HC [auth DB]
234Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsBrps2TT_C0509
UniProt
Find proteins for P62662 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62662 
Go to UniProtKB:  P62662
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62662
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S3GA [auth BC],
IC [auth DC]
206Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsCrps3TT_C1322
UniProt
Find proteins for P62663 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62663 
Go to UniProtKB:  P62663
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62663
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S4HA [auth BD],
JC [auth DD]
208Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsDrps4TT_C1301
UniProt
Find proteins for P62664 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62664 
Go to UniProtKB:  P62664
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62664
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S5IA [auth BE],
KC [auth DE]
151Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsErps5TT_C1311
UniProt
Find proteins for P62665 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62665 
Go to UniProtKB:  P62665
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62665
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S6JA [auth BF],
LC [auth DF]
101Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsFrps6TT_C1740
UniProt
Find proteins for P62666 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62666 
Go to UniProtKB:  P62666
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62666
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S7KA [auth BG],
MC [auth DG]
155Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsGrps7TT_C1332
UniProt
Find proteins for P62667 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62667 
Go to UniProtKB:  P62667
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62667
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S8LA [auth BH],
NC [auth DH]
138Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsHrps8TT_C1314
UniProt
Find proteins for P62668 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62668 
Go to UniProtKB:  P62668
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62668
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S9MA [auth BI],
OC [auth DI]
127Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsIrps9TT_C1100
UniProt
Find proteins for P62669 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62669 
Go to UniProtKB:  P62669
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62669
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S10NA [auth BJ],
PC [auth DJ]
98Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsJrps10TT_C1329
UniProt
Find proteins for P62653 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62653 
Go to UniProtKB:  P62653
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62653
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S11OA [auth BK],
QC [auth DK]
114Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsKrps11TT_C1302
UniProt
Find proteins for P62654 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62654 
Go to UniProtKB:  P62654
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62654
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S12PA [auth BL],
RC [auth DL]
122Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsLrps12TT_C1333
UniProt
Find proteins for P61941 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P61941 
Go to UniProtKB:  P61941
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61941
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S13QA [auth BM],
SC [auth DM]
117Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsMrps13TT_C1303
UniProt
Find proteins for P62655 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62655 
Go to UniProtKB:  P62655
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62655
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S14RA [auth BN],
TC [auth DN]
60Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsZrps14rpsNTT_C1315
UniProt
Find proteins for P62656 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62656 
Go to UniProtKB:  P62656
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62656
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S15SA [auth BO],
UC [auth DO]
88Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsOrps15TT_C0773
UniProt
Find proteins for P62657 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62657 
Go to UniProtKB:  P62657
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62657
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S16TA [auth BP],
VC [auth DP]
83Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsPrps16TT_C0673
UniProt
Find proteins for P62238 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62238 
Go to UniProtKB:  P62238
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62238
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S17UA [auth BQ],
WC [auth DQ]
99Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsQrps17TT_C1319
UniProt
Find proteins for P62658 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62658 
Go to UniProtKB:  P62658
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62658
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18VA [auth BR],
XC [auth DR]
70Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsRrps18TT_C1742
UniProt
Find proteins for P62659 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62659 
Go to UniProtKB:  P62659
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62659
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S19WA [auth BS],
YC [auth DS]
78Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsSrps19TT_C1324
UniProt
Find proteins for P62660 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62660 
Go to UniProtKB:  P62660
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62660
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S20XA [auth BT],
ZC [auth DT]
99Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsTrps20TT_C1031
UniProt
Find proteins for P62661 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62661 
Go to UniProtKB:  P62661
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62661
Protein Feature View
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein ThxYA [auth BU],
AD [auth DU]
24Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsUTT_C1030
UniProt
Find proteins for P62613 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27))
Explore P62613 
Go to UniProtKB:  P62613
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62613
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsLengthOrganismImage
23S ribosomal RNAA [auth AA],
CB [auth CA]
2,879Thermus thermophilus HB27
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
5S ribosomal RNAB [auth AB],
DB [auth CB]
119Thermus thermophilus HB27
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChainsLengthOrganismImage
16S ribosomal RNAEA [auth BA],
GC [auth DA]
1,504Thermus thermophilus HB27
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 52
MoleculeChainsLengthOrganismImage
tRNAZA [auth BV],
AB [auth BW],
BD [auth DV],
CD [auth DW]
77Alcaligenes sp.
Protein Feature View
Expand
  • Reference Sequence

Find similar nucleic acids by:  Sequence   |   3D Structure  

Entity ID: 53
MoleculeChainsLengthOrganismImage
mRNABB [auth BX],
DD [auth DX]
5synthetic construct
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BLS
Query on BLS

Download Ideal Coordinates CCD File 
ED [auth AA],
ZJE [auth CA]
BLASTICIDIN S
C17 H26 N8 O5
CXNPLSGKWMLZPZ-ZNIXKSQXSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
DNF [auth DN],
LBC [auth BD],
QMF [auth DD],
YBC [auth BN]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File