4UW9

The crystal structural of archaeal beta-phosphoglucomutase from hyper-thermophilic Pyrococcus sp. Strain ST 04

PDB DOI: https://doi.org/10.2210/pdb4UW9/pdb

Classification: ISOMERASE
Organism(s): Pyrococcus sp. ST04
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-08-09 Released: 2014-10-29
Deposition Author(s): Park, K.-H., Woo, E.-J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.238
R-Value Work: 0.184
R-Value Observed: 0.190

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural Features of Archaeal Beta-Phosphoglucomutase from Hyper-Thermophilic Pyrococcus Sp. Strain St 04

Park, K.-H., Jung, J.-H., Park, C.-S., Woo, E.-J.

To be published.

Macromolecule Content

Total Structure Weight: 26.02 kDa
Atom Count: 1,907
Modelled Residue Count: 228
Deposited Residue Count: 229
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BETA-PHOSPHOGLUCOMUTASE	A	229	Pyrococcus sp. ST04	Mutation(s): 0
UniProt
Find proteins for I3RFR5 (Pyrococcus sp. ST04) Explore I3RFR5 Go to UniProtKB: I3RFR5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	I3RFR5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.238
R-Value Work: 0.184
R-Value Observed: 0.190
Space Group: I 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.628	α = 90
b = 94.628	β = 90
c = 83.124	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-10-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-10-29
Type: Initial release
Version 1.1: 2015-09-23
Changes: Data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.