Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 Infection.

Acharya, P.; Tolbert, W.D.; Gohain, N.; Wu, X.; Yu, L.; Liu, T.; Huang, W.; Huang, C.C.; Kwon, Y.D.; Louder, R.K.; Luongo, T.S.; McLellan, J.S.; Pancera, M.; Yang, Y.; Zhang, B.; Flinko, R.; Foulke, J.S.; Sajadi, M.M.; Kamin-Lewis, R.; Robinson, J.E.; Martin, L.; Kwong, P.D.; Guan, Y.; DeVico, A.L.; Lewis, G.K.; Pazgier, M.

doi:10.2210/pdb4r4b/pdb

Macromolecule Content

Total Structure Weight: 190812.22
Atom Count: 13290
Residue Count: 1720
Unique protein chains: 2

4R4B

Crystal structure of the anti-hiv-1 antibody 2.2c

DOI: 10.2210/pdb4R4B/pdb

Classification: IMMUNE SYSTEM
Expression System: Homo sapiens

Deposited: 2014-08-19 Released: 2014-09-10
Deposition Author(s): McLellan, J.S., Acharya, P., Huang, C.-C., Robinson, J., Kwong, P.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.199 Å
R-Value Free: 0.214
R-Value Work: 0.166

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 Infection.

Acharya, P., Tolbert, W.D., Gohain, N., Wu, X., Yu, L., Liu, T., Huang, W., Huang, C.C., Kwon, Y.D., Louder, R.K., Luongo, T.S., McLellan, J.S., Pancera, M., Yang, Y., Zhang, B., Flinko, R., Foulke, J.S., Sajadi, M.M., Kamin-Lewis, R., Robinson, J.E., Martin, L., Kwong, P.D., Guan, Y., DeVico, A.L., Lewis, G.K., Pazgier, M.

(2014) J.Virol. 88: 12895-12906

PubMed: 25165110 Search on PubMedSearch on PubMed Central
DOI: 10.1128/JVI.02194-14
Primary Citation of Related Structures:
4R4N, 4R4H, 4R4F, 4H8W

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
FAB 2.2C LIGHT CHAIN	L, A, C, E	210	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
FAB 2.2C HEAVY CHAIN	H, B, D, F	220	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
SO4 Query on SO4 Download SDF File Download CCD File	A, B, C, D, E, F, H, L	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
NAG Query on NAG Download SDF File Download CCD File	B, D, F, H	N-ACETYL-D-GLUCOSAMINE C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.199 Å
R-Value Free: 0.214
R-Value Work: 0.166
Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 195.011	α = 90.00
b = 133.559	β = 91.36
c = 90.774	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
MOLREP	phasing
HKL-2000	data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2014-08-19
Released Date: 2014-09-10
Deposition Author(s): McLellan, J.S., Acharya, P., Huang, C.-C., Robinson, J., Kwong, P.D.

Revision History

Version 1.0: 2014-09-10
Type: Initial release
Version 1.1: 2014-10-22
Type: Database references

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Deposition Help & Resources

155830 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

4R4B

Crystal structure of the anti-hiv-1 antibody 2.2c

Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 Infection.

Entity ID: 1

Entity ID: 2

Experimental Data

Structure Validation

Deposition Data

Revision History