Download MendeleyDETERMINATION of SITE AFFINITY CONSTANTS FOR PRODUCT INHIBITION OF WILD-TYPE AND MUTANT FORMS OF RECOMBINANT HUMAN HEXOKINASE TYPE I
Shen, L., Gao, Y., Honzatko, R.B.To be published.
4FOI
Crystal Structure of recombinant human Hexokinase type I mutant D413N with Glucose 1,6-bisphosphate
- DOI: 10.2210/pdb4FOI/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2012-06-20 Released: 2013-07-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.273
- R-Value Work: 0.247
- R-Value Observed: 0.248
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hexokinase-1 | A, B | 917 | Homo sapiens | Mutation(s): 1 Gene Names: HK1 EC: 2.7.1.1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P19367 (Homo sapiens) Explore P19367 Go to UniProtKB: P19367 | |||||
PHAROS: P19367 GTEx: ENSG00000156515 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G16 Query on G16 | D [auth A], F [auth A], K [auth B], M [auth B] | 1,6-di-O-phosphono-alpha-D-glucopyranose C6 H13 O12 P2 RWHOZGRAXYWRNX-VFUOTHLCSA-M |  | Ligand Interaction | |
| CIT Query on CIT | I [auth A], P [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | Ligand Interaction | |
| BGC Query on BGC | C [auth A], E [auth A], J [auth B], L [auth B] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | Ligand Interaction | |
| NA Query on NA | G [auth A], H [auth A], N [auth B], O [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.273
- R-Value Work: 0.247
- R-Value Observed: 0.248
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.38 | α = 90 |
| b = 120.772 | β = 92.8 |
| c = 120.591 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Deposited Date: 2012-06-20
- Released Date: 2013-07-03 Deposition Author(s): Shen, L., Honzatko, R.B.
Revision History (Full details and data files)
- Version 1.0: 2013-07-03
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary
