4DKN

Crystal structure of amphioxus green fluorescent protein, GFPA1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Fluorescent proteins in Amphioxus have strickingly different brightness, yet only few (but key) molecular differences

Bomati, E.K.Haley, J.E.Noel, J.P.Deheyn, D.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPA1
A, B
223Branchiostoma floridaeMutation(s): 0 
Find proteins for C3YKQ3 (Branchiostoma floridae)
Go to UniProtKB:  C3YKQ3
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CR2
Query on CR2
A, B
L-PEPTIDE LINKINGC13 H13 N3 O4GLY, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.192 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 59.254α = 90.00
b = 125.576β = 90.00
c = 106.465γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
CNSrefinement
PHASERphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-15
    Type: Initial release
  • Version 1.1: 2017-11-29
    Type: Advisory, Database references