4C2L

Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis.

Rozeboom, H.J.Beldman, G.Schols, H.A.Dijkstra, B.W.

(2013) FEBS J. 280: 6061


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ENDO-XYLOGALACTURONAN HYDROLASE A
A
388Aspergillus tubingensisMutation(s): 0 
Gene Names: xghA
EC: 3.2.1.-
Find proteins for Q9UUZ2 (Aspergillus tubingensis)
Go to UniProtKB:  Q9UUZ2
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MAN
Query on MAN

Download SDF File 
Download CCD File 
A
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
NAG
Query on NAG

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Download CCD File 
A
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.167 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 76.440α = 90.00
b = 121.180β = 90.00
c = 129.670γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
iMOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-25
    Type: Initial release
  • Version 1.1: 2013-12-04
    Type: Database references
  • Version 1.2: 2019-01-30
    Type: Data collection, Experimental preparation, Other
  • Version 1.3: 2019-02-27
    Type: Data collection, Derived calculations, Experimental preparation