3OG6

The crystal structure of human interferon lambda 1 complexed with its high affinity receptor in space group P212121


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.097 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of the complex of human interferon-lambda1 with its high affinity receptor interferon-lambdaR1.

Miknis, Z.J.Magracheva, E.Li, W.Zdanov, A.Kotenko, S.V.Wlodawer, A.

(2010) J.Mol.Biol. 404: 650-664

  • DOI: 10.1016/j.jmb.2010.09.068
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Interferon (IFN)-λ1 [also known as interleukin (IL)-29] belongs to the recently discovered group of type III IFNs. All type III IFNs initiate signaling processes through formation of specific heterodimeric receptor complexes consisting of IFN-λR1 and ...

    Interferon (IFN)-λ1 [also known as interleukin (IL)-29] belongs to the recently discovered group of type III IFNs. All type III IFNs initiate signaling processes through formation of specific heterodimeric receptor complexes consisting of IFN-λR1 and IL-10R2. We have determined the structure of human IFN-λ1 complexed with human IFN-λR1, a receptor unique to type III IFNs. The overall structure of IFN-λ1 is topologically similar to the structure of IL-10 and other members of the IL-10 family of cytokines. IFN-λR1 consists of two distinct domains having fibronectin type III topology. The ligand-receptor interface includes helix A, loop AB, and helix F on the IFN site, as well as loops primarily from the N-terminal domain and inter-domain hinge region of IFN-λR1. Composition and architecture of the interface that includes only a few direct hydrogen bonds support an idea that long-range ionic interactions between ligand and receptor govern the process of initial recognition of the molecules while hydrophobic interactions finalize it.


    Organizational Affiliation

    Macromolecular Crystallography Laboratory, NCI-Frederick, Frederick, MD 21702, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Interleukin-29
A
196Homo sapiensMutation(s): 2 
Gene Names: IFNL1 (IL29, ZCYTO21)
Find proteins for Q8IU54 (Homo sapiens)
Go to Gene View: IFNL1
Go to UniProtKB:  Q8IU54
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Interleukin 28 receptor, alpha (Interferon, lambda receptor)
B
226Homo sapiensMutation(s): 0 
Gene Names: IFNLR1 (IL28RA, LICR2)
Find proteins for Q8IU57 (Homo sapiens)
Go to Gene View: IFNLR1
Go to UniProtKB:  Q8IU57
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.097 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.184 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 64.960α = 90.00
b = 85.790β = 90.00
c = 116.510γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
DENZOdata reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
HKL-2000data collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-10-20
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2013-07-03
    Type: Database references