3WXG

Crystal structure of CYLD USP domain (C596A) in complex with Lys63-linked diubiquitin

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Structures of CYLD USP with Met1- or Lys63-linked diubiquitin reveal mechanisms for dual specificity

Sato, Y., Yamagata, A., Goto-Ito, S., Kubota, K., Fukai, S.

(2015) Nat.Struct.Mol.Biol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized protein
A, D
312Danio rerioMutation(s): 1 
Gene Names: cylda
Find proteins for E7FEV5 (Danio rerio)
Go to UniProtKB:  E7FEV5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
B, E
76Mus musculusMutation(s): 1 
Gene Names: Ubc
Find proteins for P0CG50 (Mus musculus)
Go to UniProtKB:  P0CG50
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
C, F
72Mus musculusMutation(s): 0 
Gene Names: Ubc
Find proteins for P0CG50 (Mus musculus)
Go to UniProtKB:  P0CG50
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.188 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 50.017α = 103.49
b = 65.657β = 89.86
c = 69.821γ = 90.61
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

  • Deposited Date: 2014-07-30 
  • Released Date: 2015-02-11 
  • Deposition Author(s): Sato, Y., Fukai, S.

Revision History 

  • Version 1.0: 2015-02-11
    Type: Initial release
  • Version 1.1: 2017-08-16
    Type: Refinement description, Source and taxonomy