3N99 | pdb_00003n99

Crystal structure of TM1086

• PDB DOI: https://doi.org/10.2210/pdb3N99/pdb

• Classification: structural genomics, unknown function
• Organism(s): Thermotoga maritima
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-05-28 Released: 2010-06-16 
• Deposition Author(s): Chruszcz, M., Domagalski, M.J., Wang, S., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free: 
  0.191 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.151 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.153 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of TM1086

Chruszcz, M., Domagalski, M.J., Wang, S., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D5  (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Dihedral - D5  (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Dihedral - D5  (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10 

Biological assembly 3 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 936.25 kDa 
• Atom Count: 68,631 
• Modeled Residue Count: 8,462 
• Deposited Residue Count: 8,700 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein TM1086	A, AA [auth h], B, BA [auth i], C, CA [auth j], D, DA [auth k], E, F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth S], Q [auth T], R [auth U], S [auth V], T [auth X], U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e], Z [auth g]	290	Thermotoga maritima	Mutation(s): 0  Gene Names: TM_1086
UniProt
Find proteins for Q9X0H2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0H2  Go to UniProtKB:  Q9X0H2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	AB [auth I], AC [auth U], AD [auth h], BB [auth J], BC [auth U], BD [auth h], CB [auth J], CC [auth V], CD [auth i], DB [auth K], DC [auth V], DD [auth i], EA [auth A], EB [auth K], EC [auth V], ED [auth i], FA [auth A], FB [auth L], FC [auth X], FD [auth j], GA [auth A], GB [auth L], GC [auth X], GD [auth j], HA [auth B], HB [auth L], HC [auth X], HD [auth j], IA [auth B], IB [auth M], IC [auth a], ID [auth k], JA [auth B], JB [auth M], JC [auth a], JD [auth k], KA [auth C], KB [auth M], KC [auth a], KD [auth k], LA [auth C], LB [auth N], LC [auth b], LD [auth k], MA [auth C], MB [auth N], MC [auth b], NA [auth D], NB [auth N], NC [auth b], OA [auth D], OB [auth O], OC [auth c], PA [auth D], PB [auth O], PC [auth c], QA [auth E], QB [auth O], QC [auth c], RA [auth E], RB [auth P], RC [auth d], SA [auth G], SB [auth P], SC [auth d], TA [auth G], TB [auth S], TC [auth d], UA [auth G], UB [auth S], UC [auth e], VA [auth H], VB [auth S], VC [auth e], WA [auth H], WB [auth T], WC [auth e], XA [auth H], XB [auth T], XC [auth g], YA [auth I], YB [auth T], YC [auth g], ZA [auth I], ZB [auth U], ZC [auth h]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free:  0.191 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.151 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.153 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 289.839	α = 90
b = 299.521	β = 90
c = 316.013	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
MOLREP	phasing
REFMAC	refinement
Coot	model building
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-06-16 
Deposition Author(s): Chruszcz, M., Domagalski, M.J., Wang, S., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2010-06-16
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-04-13
  Changes: Database references, Derived calculations, Structure summary
• Version 1.3: 2023-09-06
  Changes: Data collection, Refinement description