3J9M

Structure of the human mitochondrial ribosome (class 1)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.5 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Ribosome. The structure of the human mitochondrial ribosome.

Amunts, A.Brown, A.Toots, J.Scheres, S.H.Ramakrishnan, V.

(2015) Science 348: 95-98

  • DOI: 10.1126/science.aaa1193

  • PubMed Abstract: 
  • The highly divergent ribosomes of human mitochondria (mitoribosomes) synthesize 13 essential proteins of oxidative phosphorylation complexes. We have determined the structure of the intact mitoribosome to 3.5 angstrom resolution by means of single-pa ...

    The highly divergent ribosomes of human mitochondria (mitoribosomes) synthesize 13 essential proteins of oxidative phosphorylation complexes. We have determined the structure of the intact mitoribosome to 3.5 angstrom resolution by means of single-particle electron cryogenic microscopy. It reveals 80 extensively interconnected proteins, 36 of which are specific to mitochondria, and three ribosomal RNA molecules. The head domain of the small subunit, particularly the messenger (mRNA) channel, is highly remodeled. Many intersubunit bridges are specific to the mitoribosome, which adopts conformations involving ratcheting or rolling of the small subunit that are distinct from those seen in bacteria or eukaryotes. An intrinsic guanosine triphosphatase mediates a contact between the head and central protuberance. The structure provides a reference for analysis of mutations that cause severe pathologies and for future drug design.


    Organizational Affiliation

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
uL2m
D
305Homo sapiensMutation(s): 0 
Gene Names: MRPL2
Find proteins for Q5T653 (Homo sapiens)
Go to Gene View: MRPL2
Go to UniProtKB:  Q5T653
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
uL3m
E
348Homo sapiensMutation(s): 0 
Gene Names: MRPL3 (MRL3, RPML3)
Find proteins for P09001 (Homo sapiens)
Go to Gene View: MRPL3
Go to UniProtKB:  P09001
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
uL4m
F
311Homo sapiensMutation(s): 0 
Gene Names: MRPL4
Find proteins for Q9BYD3 (Homo sapiens)
Go to Gene View: MRPL4
Go to UniProtKB:  Q9BYD3
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
bL9m
H
267Homo sapiensMutation(s): 0 
Gene Names: MRPL9
Find proteins for Q9BYD2 (Homo sapiens)
Go to Gene View: MRPL9
Go to UniProtKB:  Q9BYD2
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
uL10m
I
261Homo sapiensMutation(s): 0 
Gene Names: MRPL10 (MRPL8, RPML8)
Find proteins for Q7Z7H8 (Homo sapiens)
Go to Gene View: MRPL10
Go to UniProtKB:  Q7Z7H8
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
uL11m
J
192Homo sapiensMutation(s): 0 
Gene Names: MRPL11
Find proteins for Q9Y3B7 (Homo sapiens)
Go to Gene View: MRPL11
Go to UniProtKB:  Q9Y3B7
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
uL13m
K
178Homo sapiensMutation(s): 0 
Gene Names: MRPL13
Find proteins for Q9BYD1 (Homo sapiens)
Go to Gene View: MRPL13
Go to UniProtKB:  Q9BYD1
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
uL14m
L
145Homo sapiensMutation(s): 0 
Gene Names: MRPL14 (MRPL32, RPML32)
Find proteins for Q6P1L8 (Homo sapiens)
Go to Gene View: MRPL14
Go to UniProtKB:  Q6P1L8
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
uL15m
M
296Homo sapiensMutation(s): 0 
Gene Names: MRPL15
Find proteins for Q9P015 (Homo sapiens)
Go to Gene View: MRPL15
Go to UniProtKB:  Q9P015
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
uL16m
N
251Homo sapiensMutation(s): 0 
Gene Names: MRPL16
Find proteins for Q9NX20 (Homo sapiens)
Go to Gene View: MRPL16
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
bL17m
O
175Homo sapiensMutation(s): 0 
Gene Names: MRPL17 (LIP2)
Find proteins for Q9NRX2 (Homo sapiens)
Go to Gene View: MRPL17
Go to UniProtKB:  Q9NRX2
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
uL18m
P
179Homo sapiensMutation(s): 0 
Gene Names: MRPL18
Find proteins for A8K9D2 (Homo sapiens)
Go to Gene View: MRPL18
Go to UniProtKB:  A8K9D2
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
bL19m
Q
292Homo sapiensMutation(s): 0 
Gene Names: MRPL19 (KIAA0104, MRPL15)
Find proteins for P49406 (Homo sapiens)
Go to Gene View: MRPL19
Go to UniProtKB:  P49406
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
bL20m
R
149Homo sapiensMutation(s): 0 
Gene Names: MRPL20
Find proteins for Q9BYC9 (Homo sapiens)
Go to Gene View: MRPL20
Go to UniProtKB:  Q9BYC9
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
bL21m
S
205Homo sapiensMutation(s): 0 
Gene Names: MRPL21
Find proteins for Q7Z2W9 (Homo sapiens)
Go to Gene View: MRPL21
Go to UniProtKB:  Q7Z2W9
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
uL22m
T
212Homo sapiensMutation(s): 0 
Gene Names: MRPL22
Find proteins for E7ESL0 (Homo sapiens)
Go to Gene View: MRPL22
Go to UniProtKB:  E7ESL0
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
uL23m
U
153Homo sapiensMutation(s): 0 
Gene Names: MRPL23 (L23MRP, RPL23L)
Find proteins for Q16540 (Homo sapiens)
Go to Gene View: MRPL23
Go to UniProtKB:  Q16540
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
uL24m
V
216Homo sapiensMutation(s): 0 
Gene Names: MRPL24
Find proteins for Q96A35 (Homo sapiens)
Go to Gene View: MRPL24
Go to UniProtKB:  Q96A35
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
bL27m
W
148Homo sapiensMutation(s): 0 
Gene Names: MRPL27
Find proteins for Q9P0M9 (Homo sapiens)
Go to Gene View: MRPL27
Go to UniProtKB:  Q9P0M9
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
bL28m
X
256N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
uL29m
Y
250Homo sapiensMutation(s): 0 
Gene Names: MRPL47 (NCM1)
Find proteins for Q9HD33 (Homo sapiens)
Go to Gene View: MRPL47
Go to UniProtKB:  Q9HD33
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
uL30m
Z
161Homo sapiensMutation(s): 0 
Gene Names: MRPL30 (MRPL28, RPML28)
Find proteins for Q8TCC3 (Homo sapiens)
Go to Gene View: MRPL30
Go to UniProtKB:  Q8TCC3
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
bL32m
0
188Homo sapiensMutation(s): 0 
Gene Names: MRPL32
Find proteins for Q9BYC8 (Homo sapiens)
Go to Gene View: MRPL32
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
bL33m
1
65Homo sapiensMutation(s): 0 
Gene Names: MRPL33 (C2orf1)
Find proteins for O75394 (Homo sapiens)
Go to Gene View: MRPL33
Go to UniProtKB:  O75394
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
bL34m
2
92Homo sapiensMutation(s): 0 
Gene Names: MRPL34
Find proteins for Q9BQ48 (Homo sapiens)
Go to Gene View: MRPL34
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
bL35m
3
188Homo sapiensMutation(s): 0 
Gene Names: MRPL35
Find proteins for Q9NZE8 (Homo sapiens)
Go to Gene View: MRPL35
Go to UniProtKB:  Q9NZE8
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
bL36m
4
103Homo sapiensMutation(s): 0 
Gene Names: MRPL36 (BRIP1)
Find proteins for Q9P0J6 (Homo sapiens)
Go to Gene View: MRPL36
Go to UniProtKB:  Q9P0J6
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
mL37
5
423Homo sapiensMutation(s): 0 
Gene Names: MRPL37 (MRPL2, RPML2)
Find proteins for Q9BZE1 (Homo sapiens)
Go to Gene View: MRPL37
Go to UniProtKB:  Q9BZE1
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
mL38
6
380Homo sapiensMutation(s): 0 
Gene Names: MRPL38
Find proteins for Q96DV4 (Homo sapiens)
Go to Gene View: MRPL38
Go to UniProtKB:  Q96DV4
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
mL39
7
338Homo sapiensMutation(s): 0 
Gene Names: MRPL39 (C21orf92, MRPL5, RPML5)
Find proteins for Q9NYK5 (Homo sapiens)
Go to Gene View: MRPL39
Go to UniProtKB:  Q9NYK5
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
mL40
8
206Homo sapiensMutation(s): 0 
Gene Names: MRPL40 (NLVCF, URIM)
Find proteins for Q9NQ50 (Homo sapiens)
Go to Gene View: MRPL40
Go to UniProtKB:  Q9NQ50
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
mL41
9
137Homo sapiensMutation(s): 0 
Gene Names: MRPL41 (BMRP, MRPL27, RPML27)
Find proteins for Q8IXM3 (Homo sapiens)
Go to Gene View: MRPL41
Go to UniProtKB:  Q8IXM3
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
mL42
a
142Homo sapiensMutation(s): 0 
Gene Names: MRPL42 (MRPL31, MRPS32, RPML31)
Find proteins for Q9Y6G3 (Homo sapiens)
Go to Gene View: MRPL42
Go to UniProtKB:  Q9Y6G3
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
mL43
b
155Homo sapiensMutation(s): 0 
Gene Names: MRPL43
Find proteins for Q8N983 (Homo sapiens)
Go to Gene View: MRPL43
Go to UniProtKB:  Q8N983
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
mL44
c
332Homo sapiensMutation(s): 0 
Gene Names: MRPL44
EC: 3.1.26.-
Find proteins for Q9H9J2 (Homo sapiens)
Go to Gene View: MRPL44
Go to UniProtKB:  Q9H9J2
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
mL45
d
306Homo sapiensMutation(s): 0 
Gene Names: MRPL45
Find proteins for Q9BRJ2 (Homo sapiens)
Go to Gene View: MRPL45
Go to UniProtKB:  Q9BRJ2
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
mL46
e
279Homo sapiensMutation(s): 0 
Gene Names: MRPL46 (C15orf4, LIECG2)
Find proteins for Q9H2W6 (Homo sapiens)
Go to Gene View: MRPL46
Go to UniProtKB:  Q9H2W6
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
mL48
f
194Homo sapiensMutation(s): 0 
Gene Names: MRPL48
Find proteins for Q96GC5 (Homo sapiens)
Go to Gene View: MRPL48
Go to UniProtKB:  Q96GC5
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
mL49
g
166Homo sapiensMutation(s): 0 
Gene Names: MRPL49 (C11orf4, NOF1)
Find proteins for Q13405 (Homo sapiens)
Go to Gene View: MRPL49
Go to UniProtKB:  Q13405
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
mL50
h
158Homo sapiensMutation(s): 0 
Gene Names: MRPL50
Find proteins for Q8N5N7 (Homo sapiens)
Go to Gene View: MRPL50
Go to UniProtKB:  Q8N5N7
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
mL51
i
128Homo sapiensMutation(s): 0 
Gene Names: MRPL51 (MRP64)
Find proteins for Q4U2R6 (Homo sapiens)
Go to Gene View: MRPL51
Go to UniProtKB:  Q4U2R6
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
mL52
j
123Homo sapiensMutation(s): 0 
Find proteins for A8K7J6 (Homo sapiens)
Go to UniProtKB:  A8K7J6
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
mL53
k
112Homo sapiensMutation(s): 0 
Gene Names: MRPL53
Find proteins for Q96EL3 (Homo sapiens)
Go to Gene View: MRPL53
Go to UniProtKB:  Q96EL3
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
mL54
l
138Homo sapiensMutation(s): 0 
Gene Names: MRPL54
Find proteins for Q6P161 (Homo sapiens)
Go to Gene View: MRPL54
Go to UniProtKB:  Q6P161
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
bL31m
m
128Homo sapiensMutation(s): 0 
Gene Names: MRPL55
Find proteins for Q7Z7F7 (Homo sapiens)
Go to Gene View: MRPL55
Go to UniProtKB:  Q7Z7F7
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
mL63
o
102Homo sapiensMutation(s): 0 
Gene Names: MRPL57 (MRP63)
Find proteins for Q9BQC6 (Homo sapiens)
Go to Gene View: MRPL57
Go to UniProtKB:  Q9BQC6
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
mL62 (ICT1)
p
206Homo sapiensMutation(s): 0 
Gene Names: MRPL58 (DS1, ICT1)
EC: 3.1.1.29
Find proteins for Q14197 (Homo sapiens)
Go to Gene View: MRPL58
Go to UniProtKB:  Q14197
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
mL64 (CRIF1)
q
222Homo sapiensMutation(s): 0 
Gene Names: GADD45GIP1 (MRPL59, PLINP1, PRG6)
Find proteins for Q8TAE8 (Homo sapiens)
Go to Gene View: GADD45GIP1
Go to UniProtKB:  Q8TAE8
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
mL66 (bS18a)
r
196Homo sapiensMutation(s): 0 
Gene Names: MRPS18A
Find proteins for Q9NVS2 (Homo sapiens)
Go to Gene View: MRPS18A
Go to UniProtKB:  Q9NVS2
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
mL65 (mS30)
s
439Homo sapiensMutation(s): 0 
Gene Names: MRPS30 (PDCD9)
Find proteins for Q9NP92 (Homo sapiens)
Go to Gene View: MRPS30
Go to UniProtKB:  Q9NP92
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
Unknown protein/protein extension
t
28N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
uS2m
AB
296Homo sapiensMutation(s): 0 
Gene Names: MRPS2
Find proteins for Q9Y399 (Homo sapiens)
Go to Gene View: MRPS2
Go to UniProtKB:  Q9Y399
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
uS3m
AC
167Homo sapiensMutation(s): 0 
Gene Names: MRPS24
Find proteins for Q96EL2 (Homo sapiens)
Go to Gene View: MRPS24
Go to UniProtKB:  Q96EL2
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
uS5m
AD
430Homo sapiensMutation(s): 0 
Gene Names: MRPS5
Find proteins for P82675 (Homo sapiens)
Go to Gene View: MRPS5
Go to UniProtKB:  P82675
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
bS6m
AE
125Homo sapiensMutation(s): 0 
Gene Names: MRPS6 (C21orf101, RPMS6)
Find proteins for P82932 (Homo sapiens)
Go to Gene View: MRPS6
Go to UniProtKB:  P82932
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
uS7m
AF
242Homo sapiensMutation(s): 0 
Gene Names: MRPS7
Find proteins for Q9Y2R9 (Homo sapiens)
Go to Gene View: MRPS7
Go to UniProtKB:  Q9Y2R9
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
uS9m
AG
396Homo sapiensMutation(s): 0 
Gene Names: MRPS9 (RPMS9)
Find proteins for P82933 (Homo sapiens)
Go to Gene View: MRPS9
Go to UniProtKB:  P82933
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
uS10m
AH
201Homo sapiensMutation(s): 0 
Gene Names: MRPS10
Find proteins for P82664 (Homo sapiens)
Go to Gene View: MRPS10
Go to UniProtKB:  P82664
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
uS11m
AI
194Homo sapiensMutation(s): 0 
Gene Names: MRPS11 (RPMS11)
Find proteins for P82912 (Homo sapiens)
Go to Gene View: MRPS11
Go to UniProtKB:  P82912
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
uS12m
AJ
138Homo sapiensMutation(s): 0 
Gene Names: MRPS12 (RPMS12, RPSM12)
Find proteins for O15235 (Homo sapiens)
Go to Gene View: MRPS12
Go to UniProtKB:  O15235
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
uS14m
AK
128Homo sapiensMutation(s): 0 
Gene Names: MRPS14
Find proteins for O60783 (Homo sapiens)
Go to Gene View: MRPS14
Go to UniProtKB:  O60783
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
uS15m
AL
257Homo sapiensMutation(s): 0 
Gene Names: MRPS15 (RPMS15)
Find proteins for P82914 (Homo sapiens)
Go to Gene View: MRPS15
Go to UniProtKB:  P82914
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
bS16m
AM
137Homo sapiensMutation(s): 0 
Gene Names: MRPS16 (RPMS16)
Find proteins for Q9Y3D3 (Homo sapiens)
Go to Gene View: MRPS16
Go to UniProtKB:  Q9Y3D3
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
uS17m
AN
130Homo sapiensMutation(s): 0 
Gene Names: MRPS17 (RPMS17)
Find proteins for Q9Y2R5 (Homo sapiens)
Go to Gene View: MRPS17
Go to UniProtKB:  Q9Y2R5
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
mS40 (bS18b)
AO
258Homo sapiensMutation(s): 0 
Gene Names: MRPS18B (C6orf14)
Find proteins for Q9Y676 (Homo sapiens)
Go to Gene View: MRPS18B
Go to UniProtKB:  Q9Y676
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
bS18m (bS18c)
AP
142Homo sapiensMutation(s): 0 
Gene Names: MRPS18C
Find proteins for Q9Y3D5 (Homo sapiens)
Go to Gene View: MRPS18C
Go to UniProtKB:  Q9Y3D5
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
bS21m
AQ
87Homo sapiensMutation(s): 0 
Gene Names: MRPS21 (RPMS21)
Find proteins for P82921 (Homo sapiens)
Go to Gene View: MRPS21
Go to UniProtKB:  P82921
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
mS22
AR
360Homo sapiensMutation(s): 0 
Gene Names: MRPS22 (C3orf5, RPMS22)
Find proteins for P82650 (Homo sapiens)
Go to Gene View: MRPS22
Go to UniProtKB:  P82650
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
mS23
AS
190Homo sapiensMutation(s): 0 
Gene Names: MRPS23
Find proteins for Q9Y3D9 (Homo sapiens)
Go to Gene View: MRPS23
Go to UniProtKB:  Q9Y3D9
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
mS25
AT
173Homo sapiensMutation(s): 0 
Gene Names: MRPS25 (RPMS25)
Find proteins for P82663 (Homo sapiens)
Go to Gene View: MRPS25
Go to UniProtKB:  P82663
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
mS26
AU
205Homo sapiensMutation(s): 0 
Gene Names: MRPS26 (C20orf193, RPMS13)
Find proteins for Q9BYN8 (Homo sapiens)
Go to Gene View: MRPS26
Go to UniProtKB:  Q9BYN8
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
mS27
AV
414Homo sapiensMutation(s): 0 
Gene Names: MRPS27 (KIAA0264)
Find proteins for Q92552 (Homo sapiens)
Go to Gene View: MRPS27
Go to UniProtKB:  Q92552
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
bS1m
AW
187Homo sapiensMutation(s): 0 
Gene Names: MRPS28 (MRPS35)
Find proteins for Q9Y2Q9 (Homo sapiens)
Go to Gene View: MRPS28
Go to UniProtKB:  Q9Y2Q9
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
mS29
AX
398Homo sapiensMutation(s): 0 
Gene Names: DAP3 (MRPS29)
Find proteins for P51398 (Homo sapiens)
Go to Gene View: DAP3
Go to UniProtKB:  P51398
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
mS31
AY
395Homo sapiensMutation(s): 0 
Gene Names: MRPS31 (IMOGN38)
Find proteins for Q92665 (Homo sapiens)
Go to Gene View: MRPS31
Go to UniProtKB:  Q92665
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
mS33
AZ
106Homo sapiensMutation(s): 0 
Gene Names: MRPS33
Find proteins for Q9Y291 (Homo sapiens)
Go to Gene View: MRPS33
Go to UniProtKB:  Q9Y291
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
mS34
A0
218Homo sapiensMutation(s): 0 
Gene Names: MRPS34
Find proteins for P82930 (Homo sapiens)
Go to Gene View: MRPS34
Go to UniProtKB:  P82930
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
mS35
A1
323Homo sapiensMutation(s): 0 
Gene Names: MRPS35 (MRPS28)
Find proteins for P82673 (Homo sapiens)
Go to Gene View: MRPS35
Go to UniProtKB:  P82673
Entity ID: 83
MoleculeChainsSequence LengthOrganismDetails
mS37
A2
118Homo sapiensMutation(s): 0 
Gene Names: CHCHD1 (C10orf34, MRPS37)
Find proteins for Q96BP2 (Homo sapiens)
Go to Gene View: CHCHD1
Go to UniProtKB:  Q96BP2
Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
mS38
A3
199Homo sapiensMutation(s): 0 
Gene Names: AURKAIP1 (AIP, AKIP, MRPS38)
Find proteins for Q9NWT8 (Homo sapiens)
Go to Gene View: AURKAIP1
Go to UniProtKB:  Q9NWT8
Entity ID: 85
MoleculeChainsSequence LengthOrganismDetails
mS39
A4
579Homo sapiensMutation(s): 0 
Gene Names: PTCD3 (MRPS39)
Find proteins for Q96EY7 (Homo sapiens)
Go to Gene View: PTCD3
Go to UniProtKB:  Q96EY7
Entity ID: 1
MoleculeChainsLengthOrganism
16S rRNAA1559Homo sapiens
Entity ID: 2
MoleculeChainsLengthOrganism
mt-tRNAValB73Homo sapiens
Entity ID: 54
MoleculeChainsLengthOrganism
E-site tRNAu2Homo sapiens
Entity ID: 55
MoleculeChainsLengthOrganism
12S rRNAAA954Homo sapiens
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
AX
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
ZN
Query on ZN

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Download CCD File 
0, 4, AB, AO, AP, AT, r
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A, AA, g, M
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
A4, t
L-PEPTIDE LINKINGC4 H9 N O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.5 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-04-15
    Type: Initial release
  • Version 1.1: 2018-07-18
    Type: Data collection