3EZ7

Partition Protein Apo form in space group I4122


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.240 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis for ADP-mediated transcriptional regulation by P1 and P7 ParA.

Dunham, T.D.Xu, W.Funnell, B.E.Schumacher, M.A.

(2009) Embo J. 28: 1792-1802

  • DOI: 10.1038/emboj.2009.120
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The accurate segregation of DNA is essential for the faithful inheritance of genetic information. Segregation of the prototypical P1 plasmid par system requires two proteins, ParA and ParB, and a centromere. When bound to ATP, ParA mediates segregati ...

    The accurate segregation of DNA is essential for the faithful inheritance of genetic information. Segregation of the prototypical P1 plasmid par system requires two proteins, ParA and ParB, and a centromere. When bound to ATP, ParA mediates segregation by interacting with centromere-bound ParB, but when bound to ADP, ParA fulfils a different function: DNA-binding transcription autoregulation. The structure of ParA is unknown as is how distinct nucleotides arbitrate its different functions. To address these questions, we carried out structural and biochemical studies. Crystal structures show that ParA consists of an elongated N-terminal alpha-helix, which unexpectedly mediates dimerization, a winged-HTH and a Walker-box containing C-domain. Biochemical data confirm that apoParA forms dimers at physiological concentrations. Comparisons of four apoParA structures reveal a strikingly flexible dimer interface that allows ParA to adopt multiple conformations. The ParA-ADP structure shows that ADP-binding activates DNA binding using a bipartite mechanism. First, it locks in one specific dimer conformation, and second, it induces the folding of two DNA-binding basic motifs that we show are critical for operator binding.


    Organizational Affiliation

    Department of Biochemistry and Molecular Biology, MD Anderson Cancer Center, University of Texas, Houston, TX 77030, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Plasmid partition protein A
A
398Escherichia coliMutation(s): 1 
Gene Names: parA
Find proteins for P07620 (Escherichia coli)
Go to UniProtKB:  P07620
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.240 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 145.300α = 90.00
b = 145.300β = 90.00
c = 126.200γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
ADSCdata collection
CNSrefinement
SOLVEphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2008-10-22 
  • Released Date: 2009-06-02 
  • Deposition Author(s): Schumacher, M.A.

Revision History 

  • Version 1.0: 2009-06-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2018-01-24
    Type: Structure summary