3DCL

Crystal structure of TM1086


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.166 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of TM1086

Chruszcz, M.Evdokimova, E.Kudritska, M.Savchenko, A.Edwards, A.Minor, W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
TM1086A, B, C, D, E284Thermotoga maritimaMutation(s): 0 
Gene Names: TM_1086
UniProt
Find proteins for Q9X0H2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9X0H2 
Go to UniProtKB:  Q9X0H2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth D] , BA [auth D] , F [auth A] , FA [auth E] , G [auth A] , GA [auth E] , H [auth A] , M [auth B] , 
AA [auth D], BA [auth D], F [auth A], FA [auth E], G [auth A], GA [auth E], H [auth A], M [auth B], N [auth B], O [auth B], P [auth B], T [auth C], U [auth C], Z [auth D]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
K
Query on K

Download Ideal Coordinates CCD File 
EA [auth D], JA [auth E], L [auth A], S [auth B], Y [auth C]POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
CA [auth D] , DA [auth D] , HA [auth E] , I [auth A] , IA [auth E] , J [auth A] , K [auth A] , Q [auth B] , 
CA [auth D], DA [auth D], HA [auth E], I [auth A], IA [auth E], J [auth A], K [auth A], Q [auth B], R [auth B], V [auth C], W [auth C], X [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, EL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.166 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 164.578α = 90
b = 164.578β = 90
c = 97.815γ = 120
Software Package:
Software NamePurpose
HKL-3000phasing
MLPHAREphasing
DMmodel building
SHELXDphasing
RESOLVEmodel building
ARPmodel building
Cootmodel building
REFMACrefinement
HKL-3000data collection
HKL-2000data reduction
HKL-2000data scaling
DMphasing
RESOLVEphasing
MAINrefinement

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-08-05
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2011-10-05
    Changes: Structure summary