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Crystal structure of TM1086
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2M K/NA TARTRATE, 2M AMMONIUM SULPHATE,0.1M NA CITRATE PH5.6, VAPOR DIFFUSION - HANGING DROP, TEMPERATURE 293K, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.48 50.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 164.578 α = 90 b = 164.578 β = 90 c = 97.815 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRROR 2007-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 99.8 0.101 0.101 29.451 6.6 72494 72494 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.29 98.6 0.449 0.449 3.7 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 50 71836 71836 2862 99.16 0.166 0.166 0.164 0.1693 0.212 0.2199 RANDOM 32.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.22 -1.11 -2.22 3.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.48 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_3_deg 13.654 r_dihedral_angle_1_deg 6.695 r_scangle_it 4.156 r_scbond_it 2.774 r_angle_refined_deg 1.568 r_angle_other_deg 1.236 r_mcangle_it 1.181 r_mcbond_it 0.585
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.48 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_3_deg 13.654 r_dihedral_angle_1_deg 6.695 r_scangle_it 4.156 r_scbond_it 2.774 r_angle_refined_deg 1.568 r_angle_other_deg 1.236 r_mcangle_it 1.181 r_mcbond_it 0.585 r_symmetry_vdw_other 0.258 r_symmetry_vdw_refined 0.237 r_nbd_other 0.21 r_nbd_refined 0.202 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.141 r_mcbond_other 0.128 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.089 r_nbtor_other 0.085 r_metal_ion_refined 0.019 r_bond_refined_d 0.017 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10483 Nucleic Acid Atoms Solvent Atoms 641 Heterogen Atoms 87
Software Software Software Name Purpose HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing RESOLVE model building ARP model building Coot model building REFMAC refinement HKL-3000 data collection HKL-2000 data reduction HKL-2000 data scaling DM phasing RESOLVE phasing MAIN refinement