2AHP | pdb_00002ahp

GCN4 leucine zipper, mutation of Lys15 to epsilon-azido-Lys

PDB DOI: https://doi.org/10.2210/pdb2AHP/pdb

Classification: DE NOVO PROTEIN
Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Mutation(s): Yes

Deposited: 2005-07-28 Released: 2006-08-01
Deposition Author(s): Horne, W.S., Ghadiri, M.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.263 (Depositor), 0.270 (DCC)
R-Value Work:
0.189 (Depositor), 0.200 (DCC)
R-Value Observed:
0.192 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

GCN4 leucine zipper, mutation of Lys15 to epsilon-azido-Lys

Horne, W.S., Ghadiri, M.R.

To be published.

Macromolecule Content

Total Structure Weight: 8.17 kDa
Atom Count: 609
Modeled Residue Count: 67
Deposited Residue Count: 68
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
General control protein GCN4	A, B	34	N/A	Mutation(s): 1
UniProt
Find proteins for P03069 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P03069 Go to UniProtKB: P03069
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P03069
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
AZK Query on AZK	A, B	L-PEPTIDE LINKING	C₆ H₁₄ N₄ O		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.263 (Depositor), 0.270 (DCC)
R-Value Work: 0.189 (Depositor), 0.200 (DCC)
R-Value Observed: 0.192 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.162	α = 90
b = 30.397	β = 95.21
c = 21.716	γ = 90

Software Package:

Software Name	Purpose
d*TREK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
CrystalClear	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-08-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-08-01
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-07-10
Changes: Data collection, Database references, Derived calculations

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.