2AHP | pdb_00002ahp

GCN4 leucine zipper, mutation of Lys15 to epsilon-azido-Lys

• PDB DOI: https://doi.org/10.2210/pdb2AHP/pdb

• Classification: DE NOVO PROTEIN
• Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
• Mutation(s): Yes 


• Deposited: 2005-07-28 Released: 2006-08-01 
• Deposition Author(s): Horne, W.S., Ghadiri, M.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.263 (Depositor), 0.273 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.198 (DCC) 
• R-Value Observed: 
  0.192 (Depositor) 

Literature

GCN4 leucine zipper, mutation of Lys15 to epsilon-azido-Lys

Horne, W.S., Ghadiri, M.R.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 8.17 kDa 
• Atom Count: 609 
• Modeled Residue Count: 67 
• Deposited Residue Count: 68 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
General control protein GCN4	A, B	34	N/A	Mutation(s): 1
UniProt
Find proteins for P03069 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P03069  Go to UniProtKB:  P03069

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
AZK	A, B	L-PEPTIDE LINKING	C6 H14 N4 O		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.263 (Depositor), 0.273 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.198 (DCC) 
• R-Value Observed: 0.192 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.162	α = 90
b = 30.397	β = 95.21
c = 21.716	γ = 90

Software Package:

Software Name	Purpose
d*TREK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
CrystalClear	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-08-01 
Deposition Author(s): Horne, W.S., Ghadiri, M.R.

Revision History  

• Version 1.0: 2006-08-01
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-07-10
  Changes: Data collection, Database references, Derived calculations