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GCN4 leucine zipper, mutation of Lys15 to epsilon-azido-Lys
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.065 M Tris, 5.2% w/v PEG 8000, 35% v/v anhydrous glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.02 38.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.162 α = 90 b = 30.397 β = 95.21 c = 21.716 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV osmic confocal mirrors 2004-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.08 98.7 0.036 10.6 3.49 4473 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 98 98 0.14 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 29.08 4472 204 98.72 0.192 0.192 0.189 0.198 0.263 0.273 RANDOM 17.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.77 0.45 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.111 r_dihedral_angle_3_deg 14.942 r_dihedral_angle_4_deg 11.931 r_dihedral_angle_1_deg 4.588 r_scangle_it 4.096 r_scbond_it 2.549 r_angle_refined_deg 1.204 r_mcangle_it 1.196 r_mcbond_it 0.841 r_angle_other_deg 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.111 r_dihedral_angle_3_deg 14.942 r_dihedral_angle_4_deg 11.931 r_dihedral_angle_1_deg 4.588 r_scangle_it 4.096 r_scbond_it 2.549 r_angle_refined_deg 1.204 r_mcangle_it 1.196 r_mcbond_it 0.841 r_angle_other_deg 0.78 r_symmetry_hbond_refined 0.455 r_symmetry_vdw_refined 0.298 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.206 r_symmetry_vdw_other 0.197 r_nbd_other 0.171 r_nbtor_refined 0.171 r_mcbond_other 0.159 r_nbtor_other 0.082 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 544 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data reduction PHASER phasing