1OCY

Structure of the receptor-binding domain of the bacteriophage T4 short tail fibre


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.152 
  • R-Value Work: 0.143 

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This is version 1.3 of the entry. See complete history


Literature

The Structure of the Receptor-Binding Domain of the Bacteriophage T4 Short Tail Fibre Reveals a Knitted Trimeric Metal-Binding Fold

Thomassen, E.Gielen, G.Schuetz, M.Schoehn, G.Abrahams, J.P.Miller, S.van Raaij, M.J.

(2003) J Mol Biol 331: 361-373

  • DOI: 10.1016/s0022-2836(03)00755-1
  • Primary Citation of Related Structures:  
    1OCY

  • PubMed Abstract: 
  • Adsorption of T4 bacteriophage to the Escherichia coli host cell is mediated by six long and six short tail fibres. After at least three long tail fibres have bound, short tail fibres extend and bind irreversibly to the core region of the host cell lipo-polysaccharide (LPS), serving as inextensible stays during penetration of the cell envelope by the tail tube ...

    Adsorption of T4 bacteriophage to the Escherichia coli host cell is mediated by six long and six short tail fibres. After at least three long tail fibres have bound, short tail fibres extend and bind irreversibly to the core region of the host cell lipo-polysaccharide (LPS), serving as inextensible stays during penetration of the cell envelope by the tail tube. The short tail fibres consist of a parallel, in-register, trimer of gene product 12 (gp12).X-ray crystallography at 1.5A resolution of a protease-stable fragment of gp12 generated in the presence of zinc chloride reveals the structure of the C-terminal receptor-binding domain. It has a novel "knitted" fold, consisting of three extensively intertwined monomers. It reveals a metal-binding site, containing a zinc ion coordinated by six histidine residues in an octahedral conformation. We also suggest an LPS-binding region.


    Related Citations: 
    • Crystal Structure of a Heat- and Protease-Stable Part of the Bacteriophage T4 Short Tail Fibre
      van Raaij, M.J., Schoehn, G., Burda, M.R., Miller, S.
      (2001) J Mol Biol 314: 1137
    • Identification and Crystallisation of a Heat- and Protease-Stable Fragment of the Bacteriophage T4 Short Tail Fibre
      van Raaij, M.J., Schoehn, G., Jaquinod, M., Ashman, K., Burda, M.R., Miller, S.
      (2001) Biol Chem 382: 1049
    • Stability of Bacteriophage T4 Short Tail Fiber
      Burda, M.R., Hindennach, I., Miller, S.
      (2000) Biol Chem 381: 255
    • Folding of Coliphage T4 Short Tail Fiber in Vitro. Analysing the Role of a Bacteriophage-Encoded Chaperone
      Burda, M.R., Miller, S.
      (1999) Eur J Biochem 265: 771

    Organizational Affiliation

    Biophysical Structural Chemistry, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, NL-2333 CC, Leiden, The Netherlands.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
BACTERIOPHAGE T4 SHORT TAIL FIBREA198Tequatrovirus T4Mutation(s): 0 
Gene Names: 12
UniProt
Find proteins for P10930 (Enterobacteria phage T4)
Explore P10930 
Go to UniProtKB:  P10930
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10930
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download Ideal Coordinates CCD File 
B [auth A]CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
E [auth A]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.152 
  • R-Value Work: 0.143 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.782α = 90
b = 50.782β = 90
c = 435.647γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SOLVE/RESOLVEphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-07-24
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-02-07
    Changes: Database references, Structure summary