5DA8

Crystal structure of chaperonin GroEL from


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 5DA8

Classification: CHAPERONE

Total Structure Weight: 1631261.25

Macromolecule Entities
Molecule Chains Length Organism Details
60 kDa chaperonin A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, bA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b 545 Chlorobaculum tepidum Gene Name(s): groL groEL CT0530
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D, E, F, G, J, K, L, M, N, P, R, T, U, V, Y, Z, a, b SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, F, G, I, J, K, M, O, P, Q, R, T, U, V, Y, Z, a CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

H, M, Q, R, S, T, V MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.230
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 139.00 α = 75.46
b = 159.78 β = 90.51
c = 228.82 γ = 91.22

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-08-19
  • Released Date: 2015-10-14
  • Deposition author(s): Chang, C., Marshall, N., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2015-10-14

    Type: Initial release