5DA8

Crystal structure of chaperonin GroEL from


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of chaperonin GroEL from

Chang, C.Marshall, N.Feldmann, B.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
60 kDa chaperonin
A,
B,
C,
D,
E,
A,
B,
C,
D,
E,
F,
G,
H,
I,
J,
K,
L,
M,
N,
O,
P,
Q,
R,
S,
T,
U,
V,
W,
X,
Y,
Z,
AA [auth a],
BA [auth b]
545Chlorobaculum tepidum TLSMutation(s): 0 
Gene Names: groLgroELCT0530
EC: 5.6.1.7
UniProt
Find proteins for Q8KF02 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS))
Explore Q8KF02 
Go to UniProtKB:  Q8KF02
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8KF02
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
CA [auth A],
EA [auth B],
EB [auth R],
GA [auth C],
HA [auth D],
CA [auth A],
EA [auth B],
EB [auth R],
GA [auth C],
HA [auth D],
IA [auth E],
IB [auth T],
JA [auth F],
KB [auth U],
LA [auth G],
NB [auth V],
PA [auth J],
PB [auth Y],
RA [auth K],
RB [auth Z],
TA [auth L],
TB [auth a],
VA [auth M],
VB [auth b],
XA [auth N],
ZA [auth P]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
AB [auth P],
CB [auth Q],
DA [auth A],
FA [auth B],
FB [auth R],
AB [auth P],
CB [auth Q],
DA [auth A],
FA [auth B],
FB [auth R],
JB [auth T],
KA [auth F],
LB [auth U],
MA [auth G],
OA [auth I],
OB [auth V],
QA [auth J],
QB [auth Y],
SA [auth K],
SB [auth Z],
UB [auth a],
WA [auth M],
YA [auth O]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
BB [auth Q],
DB [auth R],
GB [auth S],
HB [auth T],
MB [auth V],
BB [auth Q],
DB [auth R],
GB [auth S],
HB [auth T],
MB [auth V],
NA [auth H],
UA [auth M]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.230 
  • R-Value Observed: 0.232 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 138.996α = 75.46
b = 159.781β = 90.51
c = 228.823γ = 91.22
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction
MOLREPphasing
SBC-Collectdata collection

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-10-14
    Type: Initial release