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Download EndnoteCrystal structure of chaperonin GroEL from
Chang, C., Marshall, N., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
5DA8
Crystal structure of chaperonin GroEL from
- DOI: 10.2210/pdb5DA8/pdb
- Classification: CHAPERONE
- Organism(s): Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
- Expression System: Escherichia coli
- Deposited: 2015-08-19 Released: 2015-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3 Å
- R-Value Free: 0.263
- R-Value Work: 0.230
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| 60 kDa chaperonin | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b | 545 | Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) | Mutation(s): 0 Gene Names: groL (groEL) |
Find proteins for Q8KF02 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Go to UniProtKB: Q8KF02 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | a, A, b, B, C, D, E, F, G, J, K, L, M, N, P, R, T, U, V, Y, Z | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CA Query on CA | A, a, B, F, G, I, J, K, M, O, P, Q, R, T, U, V, Y, Z | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | H, M, Q, R, S, T, V | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3 Å
- R-Value Free: 0.263
- R-Value Work: 0.230
- Space Group: P 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 138.996 | α = 75.46 |
| b = 159.781 | β = 90.51 |
| c = 228.823 | γ = 91.22 |
| Software Name | Purpose |
|---|---|
| MOLREP | phasing |
| SBC-Collect | data collection |
| PDB_EXTRACT | data extraction |
| SCALEPACK | data scaling |
| HKL-3000 | data reduction |
| PHENIX | refinement |
Entry History
Deposition Data
- Deposited Date: 2015-08-19
- Released Date: 2015-10-14
- Deposition Author(s): Chang, C., Marshall, N., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
