Macromolecule Content

Total Structure Weight: 1631.26 kDa
Atom Count: 99552
Modelled Residue Count: 13984
Deposited Residue Count: 15260
Unique protein chains: 1

5DA8

Crystal structure of chaperonin GroEL from

PDB DOI: 10.2210/pdb5DA8/pdb

Classification: CHAPERONE
Organism(s): Chlorobaculum tepidum TLS
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-08-19 Released: 2015-10-14
Deposition Author(s): Chang, C., Marshall, N., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.263
R-Value Work: 0.230
R-Value Observed: 0.232

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of chaperonin GroEL from

Chang, C., Marshall, N., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60 kDa chaperonin	A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA [auth a], BA [auth b]	545	Chlorobaculum tepidum TLS	Mutation(s): 0 Gene Names: groL, groEL, CT0530 EC: 5.6.1.7
UniProt
Find proteins for Q8KF02 (Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)) Explore Q8KF02 Go to UniProtKB: Q8KF02
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8KF02
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain CA [auth A] SDF format, chain EA [auth B] SDF format, chain EB [auth R] SDF format, chain GA [auth C] SDF format, chain HA [auth D] SDF format, chain IA [auth E] SDF format, chain IB [auth T] SDF format, chain JA [auth F] SDF format, chain KB [auth U] SDF format, chain LA [auth G] SDF format, chain NB [auth V] SDF format, chain PA [auth J] SDF format, chain PB [auth Y] SDF format, chain RA [auth K] SDF format, chain RB [auth Z] SDF format, chain TA [auth L] SDF format, chain TB [auth a] SDF format, chain VA [auth M] SDF format, chain VB [auth b] SDF format, chain XA [auth N] SDF format, chain ZA [auth P] MOL2 format, chain CA [auth A] MOL2 format, chain EA [auth B] MOL2 format, chain EB [auth R] MOL2 format, chain GA [auth C] MOL2 format, chain HA [auth D] MOL2 format, chain IA [auth E] MOL2 format, chain IB [auth T] MOL2 format, chain JA [auth F] MOL2 format, chain KB [auth U] MOL2 format, chain LA [auth G] MOL2 format, chain NB [auth V] MOL2 format, chain PA [auth J] MOL2 format, chain PB [auth Y] MOL2 format, chain RA [auth K] MOL2 format, chain RB [auth Z] MOL2 format, chain TA [auth L] MOL2 format, chain TB [auth a] MOL2 format, chain VA [auth M] MOL2 format, chain VB [auth b] MOL2 format, chain XA [auth N] MOL2 format, chain ZA [auth P]	CA [auth A], EA [auth B], EB [auth R], GA [auth C], HA [auth D], CA [auth A], EA [auth B], EB [auth R], GA [auth C], HA [auth D], IA [auth E], IB [auth T], JA [auth F], KB [auth U], LA [auth G], NB [auth V], PA [auth J], PB [auth Y], RA [auth K], RB [auth Z], TA [auth L], TB [auth a], VA [auth M], VB [auth b], XA [auth N], ZA [auth P]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
CA Query on CA Download Ideal Coordinates CCD File SDF format, chain AB [auth P] SDF format, chain CB [auth Q] SDF format, chain DA [auth A] SDF format, chain FA [auth B] SDF format, chain FB [auth R] SDF format, chain JB [auth T] SDF format, chain KA [auth F] SDF format, chain LB [auth U] SDF format, chain MA [auth G] SDF format, chain OA [auth I] SDF format, chain OB [auth V] SDF format, chain QA [auth J] SDF format, chain QB [auth Y] SDF format, chain SA [auth K] SDF format, chain SB [auth Z] SDF format, chain UB [auth a] SDF format, chain WA [auth M] SDF format, chain YA [auth O] MOL2 format, chain AB [auth P] MOL2 format, chain CB [auth Q] MOL2 format, chain DA [auth A] MOL2 format, chain FA [auth B] MOL2 format, chain FB [auth R] MOL2 format, chain JB [auth T] MOL2 format, chain KA [auth F] MOL2 format, chain LB [auth U] MOL2 format, chain MA [auth G] MOL2 format, chain OA [auth I] MOL2 format, chain OB [auth V] MOL2 format, chain QA [auth J] MOL2 format, chain QB [auth Y] MOL2 format, chain SA [auth K] MOL2 format, chain SB [auth Z] MOL2 format, chain UB [auth a] MOL2 format, chain WA [auth M] MOL2 format, chain YA [auth O]	AB [auth P], CB [auth Q], DA [auth A], FA [auth B], FB [auth R], AB [auth P], CB [auth Q], DA [auth A], FA [auth B], FB [auth R], JB [auth T], KA [auth F], LB [auth U], MA [auth G], OA [auth I], OB [auth V], QA [auth J], QB [auth Y], SA [auth K], SB [auth Z], UB [auth a], WA [auth M], YA [auth O]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain BB [auth Q] SDF format, chain DB [auth R] SDF format, chain GB [auth S] SDF format, chain HB [auth T] SDF format, chain MB [auth V] SDF format, chain NA [auth H] SDF format, chain UA [auth M] MOL2 format, chain BB [auth Q] MOL2 format, chain DB [auth R] MOL2 format, chain GB [auth S] MOL2 format, chain HB [auth T] MOL2 format, chain MB [auth V] MOL2 format, chain NA [auth H] MOL2 format, chain UA [auth M]	BB [auth Q], DB [auth R], GB [auth S], HB [auth T], MB [auth V], BB [auth Q], DB [auth R], GB [auth S], HB [auth T], MB [auth V], NA [auth H], UA [auth M]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.263
R-Value Work: 0.230
R-Value Observed: 0.232
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 138.996	α = 75.46
b = 159.781	β = 90.51
c = 228.823	γ = 91.22

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
PDB_EXTRACT	data extraction
HKL-3000	data reduction
MOLREP	phasing
SBC-Collect	data collection

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2015-08-19
Released Date: 2015-10-14

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2015-10-14
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.