4RJ3

CDK2 with EGFR inhibitor compound 8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 4RJ3

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 34469.06

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3QS
Query on 3QS

A 1-cyclopentyl-N-[2-(4-methoxypiperidin-1- yl)pyrimidin-4-yl]-1H-pyrrolo[3,2-c]pyridin- 6-amine
C22 H28 N6 O
BYMFSZLMPVZBJV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3QS IC50: 93 nM (100) BindingDB

IC50: 93 nM  BindingMOAD
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ALY
Query on ALY
A L-PEPTIDE LINKING C8 H16 N2 O3 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.174
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.10 α = 90.00
b = 70.92 β = 90.00
c = 72.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-10-08
  • Released Date: 2014-11-26
  • Deposition author(s): Eigenbrot, C., Yin, J.

Revision History

  • Version 1_0: 2014-11-26

    Type: Initial release

  • Version 1_1: 2014-12-10

    Type: Database references

  • Version 1_2: 2015-01-14

    Type: Database references