4XD7

Structure of thermophilic F1-ATPase inhibited by epsilon subunit


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.9 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.250

Literature

Macromolecules
Sequence Display for 4XD7

Classification: HYDROLASE

Total Structure Weight: 375685.06

Macromolecule Entities
Molecule Chains Length Organism Details
ATP synthase subunit alpha A, B, C 502 Bacillus sp. ps3 EC#: 3.6.3.14 IUBMB
Mutation: C193S, Q254K, W463F
Gene Name(s): atpA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase subunit beta D, E, F 483 Bacillus sp. ps3 EC#: 3.6.3.14 IUBMB
Gene Name(s): atpD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase gamma chain G 285 Bacillus sp. ps3 Mutation: S109C
Gene Name(s): atpG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ATP synthase epsilon chain H 133 Bacillus sp. ps3 Gene Name(s): atpC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

F ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, D, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.9 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.250
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 233.40 α = 90.00
b = 233.40 β = 90.00
c = 303.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-19
  • Released Date: 2015-08-26
  • Deposition author(s): SHIRAKIHARA, Y., SHIRATORI, A., TANIKAWA, H., NAKASAKO, M., YOSHIDA, M., SUZUKI, T.

Revision History

  • Version 1_0: 2015-08-26

    Type: Initial release

  • Version 1_1: 2015-10-07

    Type: Source and taxonomy

  • Version 1_2: 2017-04-19

    Type: Structure summary