4V5J

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.223 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history


Literature

Structure of the 70S ribosome bound to release factor 2 and a substrate analog provides insights into catalysis of peptide release.

Jin, H.Kelley, A.C.Loakes, D.Ramakrishnan, V.

(2010) Proc Natl Acad Sci U S A 107: 8593-8598

  • DOI: https://doi.org/10.1073/pnas.1003995107
  • Primary Citation of Related Structures:  
    4V5J

  • PubMed Abstract: 

    We report the crystal structure of release factor 2 bound to ribosome with an aminoacyl tRNA substrate analog at the ribosomal P site, at 3.1 A resolution. The structure shows that upon stop-codon recognition, the universally conserved GGQ motif packs tightly into the peptidyl transferase center. Nucleotide A2602 of 23S rRNA, implicated in peptide release, packs with the GGQ motif in release factor 2. The ribose of A76 of the peptidyl-tRNA adopts the C2'-endo conformation, and the 2' hydroxyl of A76 is within hydrogen-bond distance of the 2' hydroxyl of A2451. The structure suggests how a catalytic water can be coordinated in the peptidyl transferase center and, together with previous biochemical and computational data, suggests a model for how the ester bond between the peptidyl tRNA and the nascent peptide is hydrolyzed.


  • Organizational Affiliation

    Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S2B [auth AB],
IB [auth CB]
256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S3C [auth AC],
JB [auth CC]
239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S4D [auth AD],
KB [auth CD]
209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S5E [auth AE],
LB [auth CE]
162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S6F [auth AF],
MB [auth CF]
101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S7G [auth AG],
NB [auth CG]
156Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S8H [auth AH],
OB [auth CH]
138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S9I [auth AI],
PB [auth CI]
128Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S10J [auth AJ],
QB [auth CJ]
105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S11K [auth AK],
RB [auth CK]
129Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S12L [auth AL],
SB [auth CL]
132Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S13M [auth AM],
TB [auth CM]
126Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S14 TYPE ZN [auth AN],
UB [auth CN]
61Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S15O [auth AO],
VB [auth CO]
89Thermus thermophilus HB8Mutation(s): 0 
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Find proteins for Q5SJ76 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S16P [auth AP],
WB [auth CP]
88Thermus thermophilus HB8Mutation(s): 0 
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Find proteins for Q5SJH3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S17Q [auth AQ],
XB [auth CQ]
105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S18R [auth AR],
YB [auth CR]
88Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S19S [auth AS],
ZB [auth CS]
93Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN S20AC [auth CT],
T [auth AT]
106Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
30S RIBOSOMAL PROTEIN THXBC [auth CU],
U [auth AU]
27Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
PEPTIDE CHAIN RELEASE FACTOR 2FC [auth CY],
Y [auth AY]
351Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L27GC [auth D0],
Z [auth B0]
85Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L28AA [auth B1],
HC [auth D1]
98Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L29BA [auth B2],
IC [auth D2]
72Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L30CA [auth B3],
JC [auth D3]
60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L31DA [auth B4],
KC [auth D4]
71Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L32EA [auth B5],
LC [auth D5]
60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L33FA [auth B6],
MC [auth D6]
54Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L34GA [auth B7],
NC [auth D7]
49Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L35HA [auth B8],
OC [auth D8]
65Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L36IA [auth B9],
PC [auth D9]
37Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L1LA [auth BC],
SC [auth DC]
229Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L2MA [auth BD],
TC [auth DD]
276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L3NA [auth BE],
UC [auth DE]
206Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L4OA [auth BF],
VC [auth DF]
210Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L5PA [auth BG],
WC [auth DG]
182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L6QA [auth BH],
XC [auth DH]
180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L9RA [auth BI],
YC [auth DI]
148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L10SA [auth BJ],
ZC [auth DJ]
130Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L11AD [auth DK],
TA [auth BK]
147Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L13BD [auth DN],
UA [auth BN]
140Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L14CD [auth DO],
VA [auth BO]
122Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP8 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupQ5SHP8
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L15DD [auth DP],
WA [auth BP]
150Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L16ED [auth DQ],
XA [auth BQ]
141Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L17FD [auth DR],
YA [auth BR]
118Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L18GD [auth DS],
ZA [auth BS]
112Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L19AB [auth BT],
HD [auth DT]
146Thermus thermophilus HB8Mutation(s): 0 
UniProt
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UniProt GroupP60490
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L20BB [auth BU],
ID [auth DU]
118Thermus thermophilus HB8Mutation(s): 0 
UniProt
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UniProt GroupP60491
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L21CB [auth BV],
JD [auth DV]
101Thermus thermophilus HB8Mutation(s): 0 
UniProt
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UniProt GroupP60492
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L22DB [auth BW],
KD [auth DW]
113Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L23EB [auth BX],
LD [auth DX]
96Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L24FB [auth BY],
MD [auth DY]
110Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
50S RIBOSOMAL PROTEIN L25GB [auth BZ],
ND [auth DZ]
206Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHZ1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 1
MoleculeChains LengthOrganismImage
16S Ribosomal RNAA [auth AA],
HB [auth CA]
1,522Thermus thermophilus HB8
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Entity ID: 22
MoleculeChains LengthOrganismImage
E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)CC [auth CV],
DC [auth CW],
V [auth AV],
W [auth AW]
77Escherichia coli K-12
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Entity ID: 23
MoleculeChains LengthOrganismImage
MRNAEC [auth CX],
X [auth AX]
8synthetic construct
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Entity ID: 35
MoleculeChains LengthOrganismImage
23S RIBOSOMAL RNAJA [auth BA],
QC [auth DA]
2,915Thermus thermophilus HB8
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Entity ID: 36
MoleculeChains LengthOrganismImage
5S RIBOSOMAL RNAKA [auth BB],
RC [auth DB]
122Thermus thermophilus HB8
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

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NK [auth B9]
OFA [auth D9]
TEA [auth CD]
TJ [auth AD]
VJ [auth AN]
NK [auth B9],
OFA [auth D9],
TEA [auth CD],
TJ [auth AD],
VJ [auth AN],
XEA [auth CN]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AAA [auth CA]
ABA [auth CA]
ACA [auth CA]
ADA [auth CA]
AE [auth AA]
AAA [auth CA],
ABA [auth CA],
ACA [auth CA],
ADA [auth CA],
AE [auth AA],
AEA [auth CA],
AF [auth AA],
AFA [auth CV],
AG [auth AA],
AGA [auth DA],
AH [auth AA],
AHA [auth DA],
AI [auth AA],
AIA [auth DA],
AJ [auth AA],
AJA [auth DA],
AK [auth AV],
AKA [auth DA],
AL [auth BA],
ALA [auth DA],
AM [auth BA],
AMA [auth DA],
AN [auth BA],
ANA [auth DA],
AO [auth BA],
AOA [auth DA],
AP [auth BA],
APA [auth DA],
AQ [auth BA],
AQA [auth DA],
AR [auth BA],
ARA [auth DA],
AS [auth BA],
ASA [auth DA],
AT [auth BA],
ATA [auth DA],
AU [auth BA],
AV [auth BA],
AW [auth BA],
AX [auth BA],
AY [auth BA],
AZ [auth CA],
BAA [auth CA],
BBA [auth CA],
BCA [auth CA],
BDA [auth CA],
BE [auth AA],
BEA [auth CA],
BF [auth AA],
BFA [auth CV],
BG [auth AA],
BGA [auth DA],
BH [auth AA],
BHA [auth DA],
BI [auth AA],
BIA [auth DA],
BJ [auth AA],
BJA [auth DA],
BK [auth AV],
BKA [auth DA],
BL [auth BA],
BLA [auth DA],
BM [auth BA],
BMA [auth DA],
BN [auth BA],
BNA [auth DA],
BO [auth BA],
BOA [auth DA],
BP [auth BA],
BPA [auth DA],
BQ [auth BA],
BQA [auth DA],
BR [auth BA],
BRA [auth DA],
BS [auth BA],
BSA [auth DA],
BT [auth BA],
BTA [auth DA],
BU [auth BA],
BV [auth BA],
BW [auth BA],
BX [auth BA],
BY [auth BA],
BZ [auth CA],
CAA [auth CA],
CBA [auth CA],
CCA [auth CA],
CDA [auth CA],
CE [auth AA],
CEA [auth CA],
CF [auth AA],
CFA [auth CV],
CG [auth AA],
CGA [auth DA],
CH [auth AA],
CHA [auth DA],
CI [auth AA],
CIA [auth DA],
CJ [auth AA],
CJA [auth DA],
CK [auth AV],
CKA [auth DA],
CL [auth BA],
CLA [auth DA],
CM [auth BA],
CMA [auth DA],
CN [auth BA],
CNA [auth DA],
CO [auth BA],
COA [auth DA],
CP [auth BA],
CPA [auth DA],
CQ [auth BA],
CQA [auth DA],
CR [auth BA],
CRA [auth DA],
CS [auth BA],
CSA [auth DA],
CT [auth BA],
CTA [auth DA],
CU [auth BA],
CV [auth BA],
CW [auth BA],
CX [auth BA],
CY [auth BA],
CZ [auth CA],
DAA [auth CA],
DBA [auth CA],
DCA [auth CA],
DDA [auth CA],
DE [auth AA],
DEA [auth CA],
DF [auth AA],
DFA [auth CV],
DG [auth AA],
DGA [auth DA],
DH [auth AA],
DHA [auth DA],
DI [auth AA],
DIA [auth DA],
DJ [auth AA],
DJA [auth DA],
DK [auth AV],
DKA [auth DA],
DL [auth BA],
DLA [auth DA],
DM [auth BA],
DMA [auth DA],
DN [auth BA],
DNA [auth DA],
DO [auth BA],
DOA [auth DA],
DP [auth BA],
DPA [auth DA],
DQ [auth BA],
DQA [auth DA],
DR [auth BA],
DRA [auth DA],
DS [auth BA],
DSA [auth DA],
DT [auth BA],
DTA [auth DA],
DU [auth BA],
DV [auth BA],
DW [auth BA],
DX [auth BA],
DY [auth BA],
DZ [auth CA],
EAA [auth CA],
EBA [auth CA],
ECA [auth CA],
EDA [auth CA],
EE [auth AA],
EEA [auth CA],
EF [auth AA],
EFA [auth CV],
EG [auth AA],
EGA [auth DA],
EH [auth AA],
EHA [auth DA],
EI [auth AA],
EIA [auth DA],
EJ [auth AA],
EJA [auth DA],
EK [auth AW],
EKA [auth DA],
EL [auth BA],
ELA [auth DA],
EM [auth BA],
EMA [auth DA],
EN [auth BA],
ENA [auth DA],
EO [auth BA],
EOA [auth DA],
EP [auth BA],
EPA [auth DA],
EQ [auth BA],
EQA [auth DA],
ER [auth BA],
ERA [auth DA],
ES [auth BA],
ESA [auth DA],
ET [auth BA],
ETA [auth DA],
EU [auth BA],
EV [auth BA],
EW [auth BA],
EX [auth BA],
EY [auth BA],
EZ [auth CA],
FAA [auth CA],
FBA [auth CA],
FCA [auth CA],
FDA [auth CA],
FE [auth AA],
FEA [auth CA],
FF [auth AA],
FFA [auth CV],
FG [auth AA],
FGA [auth DA],
FH [auth AA],
FHA [auth DA],
FI [auth AA],
FIA [auth DA],
FJ [auth AA],
FJA [auth DA],
FK [auth AW],
FKA [auth DA],
FL [auth BA],
FLA [auth DA],
FM [auth BA],
FMA [auth DA],
FN [auth BA],
FNA [auth DA],
FO [auth BA],
FOA [auth DA],
FP [auth BA],
FPA [auth DA],
FQ [auth BA],
FQA [auth DA],
FR [auth BA],
FRA [auth DA],
FS [auth BA],
FSA [auth DA],
FT [auth BA],
FTA [auth DA],
FU [auth BA],
FV [auth BA],
FW [auth BA],
FX [auth BA],
FY [auth BA],
FZ [auth CA],
GAA [auth CA],
GBA [auth CA],
GCA [auth CA],
GDA [auth CA],
GE [auth AA],
GEA [auth CA],
GF [auth AA],
GFA [auth CW],
GG [auth AA],
GGA [auth DA],
GH [auth AA],
GHA [auth DA],
GI [auth AA],
GIA [auth DA],
GJ [auth AA],
GJA [auth DA],
GK [auth AW],
GKA [auth DA],
GL [auth BA],
GLA [auth DA],
GM [auth BA],
GMA [auth DA],
GN [auth BA],
GNA [auth DA],
GO [auth BA],
GOA [auth DA],
GP [auth BA],
GPA [auth DA],
GQ [auth BA],
GQA [auth DA],
GR [auth BA],
GRA [auth DA],
GS [auth BA],
GSA [auth DA],
GT [auth BA],
GTA [auth DA],
GU [auth BA],
GV [auth BA],
GW [auth BA],
GX [auth BA],
GY [auth BA],
GZ [auth CA],
HAA [auth CA],
HBA [auth CA],
HCA [auth CA],
HDA [auth CA],
HE [auth AA],
HEA [auth CA],
HF [auth AA],
HFA [auth CW],
HG [auth AA],
HGA [auth DA],
HH [auth AA],
HHA [auth DA],
HI [auth AA],
HIA [auth DA],
HJ [auth AA],
HJA [auth DA],
HK [auth AW],
HKA [auth DA],
HL [auth BA],
HLA [auth DA],
HM [auth BA],
HMA [auth DA],
HN [auth BA],
HNA [auth DA],
HO [auth BA],
HOA [auth DA],
HP [auth BA],
HPA [auth DA],
HQ [auth BA],
HQA [auth DA],
HR [auth BA],
HRA [auth DA],
HS [auth BA],
HSA [auth DA],
HT [auth BA],
HTA [auth DA],
HU [auth BA],
HV [auth BA],
HW [auth BA],
HX [auth BA],
HY [auth BB],
HZ [auth CA],
IAA [auth CA],
IBA [auth CA],
ICA [auth CA],
IDA [auth CA],
IE [auth AA],
IEA [auth CA],
IF [auth AA],
IFA [auth CW],
IG [auth AA],
IGA [auth DA],
IH [auth AA],
IHA [auth DA],
II [auth AA],
IIA [auth DA],
IJ [auth AA],
IJA [auth DA],
IK [auth AX],
IKA [auth DA],
IL [auth BA],
ILA [auth DA],
IM [auth BA],
IMA [auth DA],
IN [auth BA],
INA [auth DA],
IO [auth BA],
IOA [auth DA],
IP [auth BA],
IPA [auth DA],
IQ [auth BA],
IQA [auth DA],
IR [auth BA],
IRA [auth DA],
IS [auth BA],
ISA [auth DA],
IT [auth BA],
ITA [auth DA],
IU [auth BA],
IV [auth BA],
IW [auth BA],
IX [auth BA],
IY [auth BB],
IZ [auth CA],
JAA [auth CA],
JBA [auth CA],
JCA [auth CA],
JDA [auth CA],
JE [auth AA],
JEA [auth CA],
JF [auth AA],
JFA [auth CW],
JG [auth AA],
JGA [auth DA],
JH [auth AA],
JHA [auth DA],
JI [auth AA],
JIA [auth DA],
JJ [auth AA],
JJA [auth DA],
JK [auth AY],
JKA [auth DA],
JL [auth BA],
JLA [auth DA],
JM [auth BA],
JMA [auth DA],
JN [auth BA],
JNA [auth DA],
JO [auth BA],
JOA [auth DA],
JP [auth BA],
JPA [auth DA],
JQ [auth BA],
JQA [auth DA],
JR [auth BA],
JRA [auth DA],
JS [auth BA],
JSA [auth DA],
JT [auth BA],
JTA [auth DA],
JU [auth BA],
JV [auth BA],
JW [auth BA],
JX [auth BA],
JY [auth BB],
JZ [auth CA],
KAA [auth CA],
KBA [auth CA],
KCA [auth CA],
KDA [auth CA],
KE [auth AA],
KEA [auth CA],
KF [auth AA],
KFA [auth CX],
KG [auth AA],
KGA [auth DA],
KH [auth AA],
KHA [auth DA],
KI [auth AA],
KIA [auth DA],
KJ [auth AA],
KJA [auth DA],
KK [auth B1],
KKA [auth DA],
KL [auth BA],
KLA [auth DA],
KM [auth BA],
KMA [auth DA],
KN [auth BA],
KNA [auth DA],
KO [auth BA],
KOA [auth DA],
KP [auth BA],
KPA [auth DA],
KQ [auth BA],
KQA [auth DA],
KR [auth BA],
KRA [auth DA],
KS [auth BA],
KSA [auth DA],
KT [auth BA],
KTA [auth DB],
KU [auth BA],
KV [auth BA],
KW [auth BA],
KX [auth BA],
KY [auth BB],
KZ [auth CA],
LAA [auth CA],
LBA [auth CA],
LCA [auth CA],
LDA [auth CA],
LE [auth AA],
LEA [auth CA],
LF [auth AA],
LFA [auth D1],
LG [auth AA],
LGA [auth DA],
LH [auth AA],
LHA [auth DA],
LI [auth AA],
LIA [auth DA],
LJ [auth AA],
LJA [auth DA],
LK [auth B5],
LKA [auth DA],
LL [auth BA],
LLA [auth DA],
LM [auth BA],
LMA [auth DA],
LN [auth BA],
LNA [auth DA],
LO [auth BA],
LOA [auth DA],
LP [auth BA],
LPA [auth DA],
LQ [auth BA],
LQA [auth DA],
LR [auth BA],
LRA [auth DA],
LS [auth BA],
LSA [auth DA],
LT [auth BA],
LTA [auth DB],
LU [auth BA],
LV [auth BA],
LW [auth BA],
LX [auth BA],
LY [auth BD],
LZ [auth CA],
MAA [auth CA],
MBA [auth CA],
MCA [auth CA],
MDA [auth CA],
ME [auth AA],
MEA [auth CA],
MF [auth AA],
MFA [auth D5],
MG [auth AA],
MGA [auth DA],
MH [auth AA],
MHA [auth DA],
MI [auth AA],
MIA [auth DA],
MJ [auth AA],
MJA [auth DA],
MK [auth B5],
MKA [auth DA],
ML [auth BA],
MLA [auth DA],
MM [auth BA],
MMA [auth DA],
MN [auth BA],
MNA [auth DA],
MO [auth BA],
MOA [auth DA],
MP [auth BA],
MPA [auth DA],
MQ [auth BA],
MQA [auth DA],
MR [auth BA],
MRA [auth DA],
MS [auth BA],
MSA [auth DA],
MT [auth BA],
MTA [auth DB],
MU [auth BA],
MV [auth BA],
MW [auth BA],
MX [auth BA],
MY [auth BD],
MZ [auth CA],
NAA [auth CA],
NBA [auth CA],
NCA [auth CA],
NDA [auth CA],
NE [auth AA],
NEA [auth CA],
NF [auth AA],
NFA [auth D5],
NG [auth AA],
NGA [auth DA],
NH [auth AA],
NHA [auth DA],
NI [auth AA],
NIA [auth DA],
NJ [auth AA],
NJA [auth DA],
NKA [auth DA],
NL [auth BA],
NLA [auth DA],
NM [auth BA],
NMA [auth DA],
NN [auth BA],
NNA [auth DA],
NO [auth BA],
NOA [auth DA],
NP [auth BA],
NPA [auth DA],
NQ [auth BA],
NQA [auth DA],
NR [auth BA],
NRA [auth DA],
NS [auth BA],
NSA [auth DA],
NT [auth BA],
NTA [auth DB],
NU [auth BA],
NV [auth BA],
NW [auth BA],
NX [auth BA],
NY [auth BF],
NZ [auth CA],
OAA [auth CA],
OBA [auth CA],
OCA [auth CA],
OD [auth AA],
ODA [auth CA],
OE [auth AA],
OEA [auth CA],
OF [auth AA],
OG [auth AA],
OGA [auth DA],
OH [auth AA],
OHA [auth DA],
OI [auth AA],
OIA [auth DA],
OJ [auth AA],
OJA [auth DA],
OK [auth BA],
OKA [auth DA],
OL [auth BA],
OLA [auth DA],
OM [auth BA],
OMA [auth DA],
ON [auth BA],
ONA [auth DA],
OO [auth BA],
OOA [auth DA],
OP [auth BA],
OPA [auth DA],
OQ [auth BA],
OQA [auth DA],
OR [auth BA],
ORA [auth DA],
OS [auth BA],
OSA [auth DA],
OT [auth BA],
OTA [auth DD],
OU [auth BA],
OV [auth BA],
OW [auth BA],
OX [auth BA],
OY [auth BF],
OZ [auth CA],
PAA [auth CA],
PBA [auth CA],
PCA [auth CA],
PD [auth AA],
PDA [auth CA],
PE [auth AA],
PEA [auth CA],
PF [auth AA],
PFA [auth DA],
PG [auth AA],
PGA [auth DA],
PH [auth AA],
PHA [auth DA],
PI [auth AA],
PIA [auth DA],
PJ [auth AA],
PJA [auth DA],
PK [auth BA],
PKA [auth DA],
PL [auth BA],
PLA [auth DA],
PM [auth BA],
PMA [auth DA],
PN [auth BA],
PNA [auth DA],
PO [auth BA],
POA [auth DA],
PP [auth BA],
PPA [auth DA],
PQ [auth BA],
PQA [auth DA],
PR [auth BA],
PRA [auth DA],
PS [auth BA],
PSA [auth DA],
PT [auth BA],
PTA [auth DE],
PU [auth BA],
PV [auth BA],
PW [auth BA],
PX [auth BA],
PY [auth BG],
PZ [auth CA],
QAA [auth CA],
QBA [auth CA],
QCA [auth CA],
QD [auth AA],
QDA [auth CA],
QE [auth AA],
QEA [auth CA],
QF [auth AA],
QFA [auth DA],
QG [auth AA],
QGA [auth DA],
QH [auth AA],
QHA [auth DA],
QI [auth AA],
QIA [auth DA],
QJ [auth AA],
QJA [auth DA],
QK [auth BA],
QKA [auth DA],
QL [auth BA],
QLA [auth DA],
QM [auth BA],
QMA [auth DA],
QN [auth BA],
QNA [auth DA],
QO [auth BA],
QOA [auth DA],
QP [auth BA],
QPA [auth DA],
QQ [auth BA],
QQA [auth DA],
QR [auth BA],
QRA [auth DA],
QS [auth BA],
QSA [auth DA],
QT [auth BA],
QTA [auth DF],
QU [auth BA],
QV [auth BA],
QW [auth BA],
QX [auth BA],
QY [auth BT],
QZ [auth CA],
RAA [auth CA],
RBA [auth CA],
RCA [auth CA],
RD [auth AA],
RDA [auth CA],
RE [auth AA],
REA [auth CA],
RF [auth AA],
RFA [auth DA],
RG [auth AA],
RGA [auth DA],
RH [auth AA],
RHA [auth DA],
RI [auth AA],
RIA [auth DA],
RJ [auth AA],
RJA [auth DA],
RK [auth BA],
RKA [auth DA],
RL [auth BA],
RLA [auth DA],
RM [auth BA],
RMA [auth DA],
RN [auth BA],
RNA [auth DA],
RO [auth BA],
ROA [auth DA],
RP [auth BA],
RPA [auth DA],
RQ [auth BA],
RQA [auth DA],
RR [auth BA],
RRA [auth DA],
RS [auth BA],
RSA [auth DA],
RT [auth BA],
RTA [auth DG],
RU [auth BA],
RV [auth BA],
RW [auth BA],
RX [auth BA],
RY [auth BX],
RZ [auth CA],
SAA [auth CA],
SBA [auth CA],
SCA [auth CA],
SD [auth AA],
SDA [auth CA],
SE [auth AA],
SEA [auth CD],
SF [auth AA],
SFA [auth DA],
SG [auth AA],
SGA [auth DA],
SH [auth AA],
SHA [auth DA],
SI [auth AA],
SIA [auth DA],
SJ [auth AA],
SJA [auth DA],
SK [auth BA],
SKA [auth DA],
SL [auth BA],
SLA [auth DA],
SM [auth BA],
SMA [auth DA],
SN [auth BA],
SNA [auth DA],
SO [auth BA],
SOA [auth DA],
SP [auth BA],
SPA [auth DA],
SQ [auth BA],
SQA [auth DA],
SR [auth BA],
SRA [auth DA],
SS [auth BA],
SSA [auth DA],
ST [auth BA],
STA [auth DH],
SU [auth BA],
SV [auth BA],
SW [auth BA],
SX [auth BA],
SY [auth BY],
SZ [auth CA],
TAA [auth CA],
TBA [auth CA],
TCA [auth CA],
TD [auth AA],
TDA [auth CA],
TE [auth AA],
TF [auth AA],
TFA [auth DA],
TG [auth AA],
TGA [auth DA],
TH [auth AA],
THA [auth DA],
TI [auth AA],
TIA [auth DA],
TJA [auth DA],
TK [auth BA],
TKA [auth DA],
TL [auth BA],
TLA [auth DA],
TM [auth BA],
TMA [auth DA],
TN [auth BA],
TNA [auth DA],
TO [auth BA],
TOA [auth DA],
TP [auth BA],
TPA [auth DA],
TQ [auth BA],
TQA [auth DA],
TR [auth BA],
TRA [auth DA],
TS [auth BA],
TSA [auth DA],
TT [auth BA],
TTA [auth DP],
TU [auth BA],
TV [auth BA],
TW [auth BA],
TX [auth BA],
TY [auth CA],
TZ [auth CA],
UAA [auth CA],
UBA [auth CA],
UCA [auth CA],
UD [auth AA],
UDA [auth CA],
UE [auth AA],
UEA [auth CL],
UF [auth AA],
UFA [auth DA],
UG [auth AA],
UGA [auth DA],
UH [auth AA],
UHA [auth DA],
UI [auth AA],
UIA [auth DA],
UJ [auth AL],
UJA [auth DA],
UK [auth BA],
UKA [auth DA],
UL [auth BA],
ULA [auth DA],
UM [auth BA],
UMA [auth DA],
UN [auth BA],
UNA [auth DA],
UO [auth BA],
UOA [auth DA],
UP [auth BA],
UPA [auth DA],
UQ [auth BA],
UQA [auth DA],
UR [auth BA],
URA [auth DA],
US [auth BA],
USA [auth DA],
UT [auth BA],
UTA [auth DS],
UU [auth BA],
UV [auth BA],
UW [auth BA],
UX [auth BA],
UY [auth CA],
UZ [auth CA],
VAA [auth CA],
VBA [auth CA],
VCA [auth CA],
VD [auth AA],
VDA [auth CA],
VE [auth AA],
VEA [auth CL],
VF [auth AA],
VFA [auth DA],
VG [auth AA],
VGA [auth DA],
VH [auth AA],
VHA [auth DA],
VI [auth AA],
VIA [auth DA],
VJA [auth DA],
VK [auth BA],
VKA [auth DA],
VL [auth BA],
VLA [auth DA],
VM [auth BA],
VMA [auth DA],
VN [auth BA],
VNA [auth DA],
VO [auth BA],
VOA [auth DA],
VP [auth BA],
VPA [auth DA],
VQ [auth BA],
VQA [auth DA],
VR [auth BA],
VRA [auth DA],
VS [auth BA],
VSA [auth DA],
VT [auth BA],
VTA [auth DX],
VU [auth BA],
VV [auth BA],
VW [auth BA],
VX [auth BA],
VY [auth CA],
VZ [auth CA],
WAA [auth CA],
WBA [auth CA],
WCA [auth CA],
WD [auth AA],
WDA [auth CA],
WE [auth AA],
WEA [auth CN],
WF [auth AA],
WFA [auth DA],
WG [auth AA],
WGA [auth DA],
WH [auth AA],
WHA [auth DA],
WI [auth AA],
WIA [auth DA],
WJ [auth AS],
WJA [auth DA],
WK [auth BA],
WKA [auth DA],
WL [auth BA],
WLA [auth DA],
WM [auth BA],
WMA [auth DA],
WN [auth BA],
WNA [auth DA],
WO [auth BA],
WOA [auth DA],
WP [auth BA],
WPA [auth DA],
WQ [auth BA],
WQA [auth DA],
WR [auth BA],
WRA [auth DA],
WS [auth BA],
WSA [auth DA],
WT [auth BA],
WU [auth BA],
WV [auth BA],
WW [auth BA],
WX [auth BA],
WY [auth CA],
WZ [auth CA],
XAA [auth CA],
XBA [auth CA],
XCA [auth CA],
XD [auth AA],
XDA [auth CA],
XE [auth AA],
XF [auth AA],
XFA [auth DA],
XG [auth AA],
XGA [auth DA],
XH [auth AA],
XHA [auth DA],
XI [auth AA],
XIA [auth DA],
XJ [auth AV],
XJA [auth DA],
XK [auth BA],
XKA [auth DA],
XL [auth BA],
XLA [auth DA],
XM [auth BA],
XMA [auth DA],
XN [auth BA],
XNA [auth DA],
XO [auth BA],
XOA [auth DA],
XP [auth BA],
XPA [auth DA],
XQ [auth BA],
XQA [auth DA],
XR [auth BA],
XRA [auth DA],
XS [auth BA],
XSA [auth DA],
XT [auth BA],
XU [auth BA],
XV [auth BA],
XW [auth BA],
XX [auth BA],
XY [auth CA],
XZ [auth CA],
YAA [auth CA],
YBA [auth CA],
YCA [auth CA],
YD [auth AA],
YDA [auth CA],
YE [auth AA],
YEA [auth CS],
YF [auth AA],
YFA [auth DA],
YG [auth AA],
YGA [auth DA],
YH [auth AA],
YHA [auth DA],
YI [auth AA],
YIA [auth DA],
YJ [auth AV],
YJA [auth DA],
YK [auth BA],
YKA [auth DA],
YL [auth BA],
YLA [auth DA],
YM [auth BA],
YMA [auth DA],
YN [auth BA],
YNA [auth DA],
YO [auth BA],
YOA [auth DA],
YP [auth BA],
YPA [auth DA],
YQ [auth BA],
YQA [auth DA],
YR [auth BA],
YRA [auth DA],
YS [auth BA],
YSA [auth DA],
YT [auth BA],
YU [auth BA],
YV [auth BA],
YW [auth BA],
YX [auth BA],
YY [auth CA],
YZ [auth CA],
ZAA [auth CA],
ZBA [auth CA],
ZCA [auth CA],
ZD [auth AA],
ZDA [auth CA],
ZE [auth AA],
ZEA [auth CV],
ZF [auth AA],
ZFA [auth DA],
ZG [auth AA],
ZGA [auth DA],
ZH [auth AA],
ZHA [auth DA],
ZI [auth AA],
ZIA [auth DA],
ZJ [auth AV],
ZJA [auth DA],
ZK [auth BA],
ZKA [auth DA],
ZL [auth BA],
ZLA [auth DA],
ZM [auth BA],
ZMA [auth DA],
ZN [auth BA],
ZNA [auth DA],
ZO [auth BA],
ZOA [auth DA],
ZP [auth BA],
ZPA [auth DA],
ZQ [auth BA],
ZQA [auth DA],
ZR [auth BA],
ZRA [auth DA],
ZS [auth BA],
ZSA [auth DA],
ZT [auth BA],
ZU [auth BA],
ZV [auth BA],
ZW [auth BA],
ZX [auth BA],
ZY [auth CA],
ZZ [auth CA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
PHA
Query on PHA
CC [auth CV],
DC [auth CW],
V [auth AV],
W [auth AW]
L-PEPTIDE LINKINGC9 H11 N OPHE
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.223 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 211.421α = 90
b = 452.497β = 90
c = 625.444γ = 90
Software Package:
Software NamePurpose
CNSmodel building
CNSrefinement
XDSdata reduction
XSCALEdata scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Changes: Other
  • Version 1.2: 2018-04-18
    Changes: Data collection, Database references, Source and taxonomy, Structure summary
  • Version 1.3: 2024-01-10
    Changes: Data collection, Database references, Derived calculations, Refinement description