4QDH

Crystal Structure of the C-terminal Domain of Mouse TLR9


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 4QDH

Classification: IMMUNE SYSTEM

Total Structure Weight: 100529.67

Macromolecule Entities
Molecule Chains Length Organism Details
Variable lymphocyte receptor B, Toll-like receptor 9 chimera A, B 438 Eptatretus burgeri Mus musculus Fragment: SEE REMARK 999
Gene Name(s): VLRB Tlr9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.214
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 106.03 α = 90.00
b = 106.03 β = 90.00
c = 221.55 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-05-13
  • Released Date: 2014-06-11
  • Deposition author(s): Collins, B.C., Wilson, I.A.

Revision History

  • Version 1_0: 2014-06-11

    Type: Initial release

  • Version 1_1: 2014-07-02

    Type: Database references

  • Version 1_2: 2014-10-08

    Type: Database references

  • Version 1_3: 2017-07-26

    Type: Refinement description, Source and taxonomy