U5P: URIDINE-5'-MONOPHOSPHATE
U5P is a Ligand Of Interest in 5MKN designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5MKN_U5P_P_101 | 36% | 83% | 0.151 | 0.879 | 0.29 | 0.48 | - | - | 0 | 0 | 81% | 0.86 |
| 5MKN_U5P_a_101 | 18% | 56% | 0.192 | 0.816 | 0.5 | 1.19 | - | 3 | 0 | 0 | 81% | 0.93 |
| 5MKN_U5P_F_102 | 18% | 28% | 0.245 | 0.837 | 0.89 | 1.98 | 1 | 8 | 0 | 0 | 95% | 0.68 |
| 5MKN_U5P_A_101 | 17% | 68% | 0.217 | 0.826 | 0.46 | 0.78 | - | 1 | 0 | 0 | 81% | 0.9 |
| 5MKN_U5P_I_101 | 16% | 83% | 0.234 | 0.835 | 0.31 | 0.46 | - | - | 0 | 0 | 81% | 0.85 |
| 5MKN_U5P_D_101 | 16% | 80% | 0.237 | 0.838 | 0.35 | 0.48 | - | - | 0 | 0 | 81% | 0.78 |
| 5MKN_U5P_U_102 | 14% | 32% | 0.251 | 0.812 | 0.87 | 1.82 | - | 6 | 0 | 0 | 95% | 0.74 |
| 5MKN_U5P_C_101 | 10% | 54% | 0.246 | 0.789 | 0.52 | 1.23 | - | 3 | 0 | 0 | 81% | 0.8 |
| 5MKN_U5P_b_101 | 9% | 88% | 0.26 | 0.785 | 0.25 | 0.42 | - | - | 0 | 0 | 81% | 0.78 |
| 5MKN_U5P_N_101 | 9% | 70% | 0.275 | 0.795 | 0.4 | 0.75 | - | 1 | 0 | 0 | 81% | 0.8 |
| 5MKN_U5P_F_101 | 8% | 81% | 0.274 | 0.779 | 0.33 | 0.49 | - | - | 0 | 0 | 81% | 0.74 |
| 5MKN_U5P_L_101 | 7% | 76% | 0.274 | 0.766 | 0.43 | 0.52 | - | - | 0 | 0 | 81% | 0.8 |
| 5MKN_U5P_Q_101 | 6% | 82% | 0.238 | 0.715 | 0.32 | 0.48 | - | - | 0 | 0 | 81% | 0.79 |
| 5MKN_U5P_Z_101 | 6% | 69% | 0.242 | 0.712 | 0.32 | 0.85 | - | 1 | 0 | 0 | 81% | 0.83 |
| 5MKN_U5P_R_101 | 5% | 73% | 0.271 | 0.724 | 0.4 | 0.65 | - | 1 | 0 | 0 | 81% | 0.84 |
| 5MKN_U5P_K_101 | 5% | 83% | 0.292 | 0.733 | 0.3 | 0.48 | - | - | 0 | 0 | 81% | 0.87 |
| 5MKN_U5P_V_101 | 5% | 80% | 0.282 | 0.717 | 0.29 | 0.54 | - | - | 0 | 0 | 81% | 0.81 |
| 5MKN_U5P_E_101 | 4% | 75% | 0.288 | 0.712 | 0.42 | 0.56 | - | - | 0 | 0 | 81% | 0.81 |
| 5MKN_U5P_W_101 | 4% | 63% | 0.312 | 0.73 | 0.39 | 1 | - | 2 | 0 | 0 | 81% | 0.75 |
| 5MKN_U5P_B_101 | 4% | 86% | 0.286 | 0.692 | 0.32 | 0.39 | - | - | 0 | 0 | 81% | 0.77 |
| 5MKN_U5P_T_101 | 4% | 85% | 0.28 | 0.683 | 0.31 | 0.42 | - | - | 0 | 0 | 81% | 0.8 |
| 5MKN_U5P_G_101 | 3% | 81% | 0.279 | 0.644 | 0.39 | 0.43 | - | - | 0 | 0 | 81% | 0.79 |
| 5MKN_U5P_U_101 | 3% | 71% | 0.303 | 0.665 | 0.42 | 0.68 | - | 1 | 0 | 0 | 81% | 0.84 |
| 5MKN_U5P_d_101 | 2% | 67% | 0.324 | 0.65 | 0.39 | 0.88 | - | 1 | 0 | 0 | 81% | 0.87 |
| 5MKN_U5P_O_101 | 2% | 78% | 0.329 | 0.645 | 0.34 | 0.54 | - | - | 0 | 0 | 81% | 0.76 |
| 5MKN_U5P_M_101 | 2% | 78% | 0.335 | 0.638 | 0.36 | 0.52 | - | - | 0 | 0 | 81% | 0.77 |
| 5MKN_U5P_J_101 | 2% | 79% | 0.32 | 0.61 | 0.29 | 0.56 | - | - | 0 | 0 | 81% | 0.8 |
| 5MKN_U5P_H_101 | 1% | 87% | 0.353 | 0.616 | 0.33 | 0.36 | - | - | 0 | 0 | 81% | 0.78 |
| 5MKN_U5P_Y_101 | 1% | 87% | 0.343 | 0.604 | 0.3 | 0.39 | - | - | 0 | 0 | 81% | 0.73 |
| 5MKN_U5P_X_101 | 1% | 87% | 0.385 | 0.507 | 0.27 | 0.42 | - | - | 0 | 0 | 81% | 0.74 |
| 6ZX0_U5P_A_502 | 100% | 72% | 0.021 | 0.996 | 0.47 | 0.6 | - | 1 | 0 | 0 | 100% | 0.25 |
| 7AM9_U5P_A_502 | 100% | 70% | 0.019 | 0.997 | 0.52 | 0.62 | - | - | 2 | 0 | 100% | 0.28 |
| 7OQF_U5P_A_505 | 100% | 73% | 0.018 | 0.998 | 0.49 | 0.56 | - | 1 | 0 | 0 | 100% | 0.31 |
| 7OQI_U5P_A_505 | 100% | 72% | 0.018 | 0.997 | 0.49 | 0.58 | - | 1 | 0 | 0 | 100% | 0.49 |
| 7OQK_U5P_A_505 | 100% | 71% | 0.018 | 0.997 | 0.47 | 0.64 | - | - | 0 | 0 | 100% | 0.59 |














