5MKN
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
AA [auth b] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
BA [auth d] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
S [auth T] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
T [auth U] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
U [auth V] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
V [auth W] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
W [auth X] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
X [auth Y] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
Y [auth Z] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
Z [auth a] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063440 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01423 | e5mknA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
AA [auth b] | PF01423 | e5mknb1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
B | PF01423 | e5mknB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
BA [auth d] | PF01423 | e5mknd1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
C | PF01423 | e5mknC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
D | PF01423 | e5mknD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
E | PF01423 | e5mknE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
F | PF01423 | e5mknF1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
G | PF01423 | e5mknG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
H | PF01423 | e5mknH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
I | PF01423 | e5mknI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
J | PF01423 | e5mknJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
K | PF01423 | e5mknK1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
L | PF01423 | e5mknL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
M | PF01423 | e5mknM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
N | PF01423 | e5mknN1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
O | PF01423 | e5mknO1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
P | PF01423 | e5mknP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Q | PF01423 | e5mknQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
R | PF01423 | e5mknR1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
S [auth T] | PF01423 | e5mknT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
T [auth U] | PF01423 | e5mknU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
U [auth V] | PF01423 | e5mknV1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
V [auth W] | PF01423 | e5mknW1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
W [auth X] | PF01423 | e5mknX1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
X [auth Y] | PF01423 | e5mknY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Y [auth Z] | PF01423 | e5mknZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Z [auth a] | PF01423 | e5mkna1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01423 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01423 | LSM domain (LSM) | LSM domain | The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Like-Sm ribonucleoprotein core | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001163 | Sm domain, eukaryotic/archaea-type | Domain | |
IPR010920 | LSM domain superfamily | Homologous Superfamily | |
IPR047575 | Sm domain | Domain | |
IPR022901 | snRNP Sm-like, putative, archaea | Family |