☰ Navigation Tabs
Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QUM
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.0884 f_angle_d 1.0889 f_chiral_restr 0.0495 f_plane_restr 0.0054 f_bond_d 0.0041
Sample Vo domain of V/A-ATPase from Thermus thermophilus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 40093 Reported Resolution (Å) 4.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6QUM) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 29000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING Coot 0.9.4 MODEL FITTING ISOLDE 1.6 FINAL EULER ASSIGNMENT cryoSPARC 4.6 CLASSIFICATION cryoSPARC 4.6 RECONSTRUCTION cryoSPARC 4.6 MODEL REFINEMENT PHENIX 1.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION