9U6K | pdb_00009u6k

Cryo-EM structure of the Vo domain of V/A-ATPase under pmf condition, State3B

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth O]		e9u6kO1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
C [auth P]		e9u6kP1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
D [auth Q]		e9u6kQ1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
E [auth R]		e9u6kR1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
F [auth S]		e9u6kS1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
G [auth T]		e9u6kT1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
H [auth U]		e9u6kU1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
I [auth V]		e9u6kV1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
J [auth W]		e9u6kW1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
L [auth Y]		e9u6kY1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
M [auth Z]		e9u6kZ1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)
K [auth X]		e9u6kX1	A: ATPD N-terminal domain-like	X: N-terminal domain of the delta subunit of the F1F0-ATP synthase	H: N-terminal domain of the delta subunit of the F1F0-ATP synthase	T: Fusion_gly	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth N]	PF01496	V-type ATPase 116kDa subunit family (V_ATPase_I)	V-type ATPase 116kDa subunit family	-	Family
B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth N]	V-type ATP synthase subunit I	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity proton-transporting ATPase activity, rotational mechanism ATPase-coupled monoatomic cation transmembrane transporter activity ATP-dependent activity active monoatomic ion transmembrane transporter activity ATPase-coupled ion transmembrane transporter activity active transmembrane transporter activity ATPase activity, coupled to transmembrane movement of ions, rotational mechanism monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity proton-transporting ATPase activity, rotational mechanism ATPase-coupled monoatomic cation transmembrane transporter activity ATP-dependent activity active monoatomic ion transmembrane transporter activity ATPase-coupled ion transmembrane transporter activity active transmembrane transporter activity ATPase activity, coupled to transmembrane movement of ions, rotational mechanism monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity ATPase binding protein binding binding enzyme binding	homeostatic process biological regulation intracellular pH reduction regulation of intracellular pH vacuolar acidification cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis regulation of biological quality monoatomic cation homeostasis regulation of cellular pH homeostatic process biological regulation intracellular pH reduction regulation of intracellular pH vacuolar acidification cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis regulation of biological quality monoatomic cation homeostasis regulation of cellular pH intracellular monoatomic ion homeostasis	ATPase dependent transmembrane transport complex protein-containing complex ATPase complex catalytic complex membrane membrane protein complex proton-transporting V-type ATPase complex transporter complex proton-transporting two-sector ATPase complex, proton-transporting domain cation-transporting ATPase complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex proton-transporting V-type ATPase, V0 domain ATPase dependent transmembrane transport complex protein-containing complex ATPase complex catalytic complex membrane membrane protein complex proton-transporting V-type ATPase complex transporter complex proton-transporting two-sector ATPase complex, proton-transporting domain cation-transporting ATPase complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex proton-transporting V-type ATPase, V0 domain membrane-bounded organelle intracellular anatomical structure intracellular organelle bounding membrane of organelle vacuolar membrane vacuole intracellular membrane-bounded organelle vacuolar proton-transporting V-type ATPase complex organelle cytoplasm organelle membrane
B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	V-type ATP synthase, subunit K	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity proton-transporting ATPase activity, rotational mechanism ATPase-coupled monoatomic cation transmembrane transporter activity ATP-dependent activity active monoatomic ion transmembrane transporter activity ATPase-coupled ion transmembrane transporter activity active transmembrane transporter activity ATPase activity, coupled to transmembrane movement of ions, rotational mechanism monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	-	ATPase dependent transmembrane transport complex protein-containing complex ATPase complex catalytic complex membrane membrane protein complex proton-transporting V-type ATPase complex transporter complex proton-transporting two-sector ATPase complex, proton-transporting domain cation-transporting ATPase complex cellular anatomical structure proton-transporting two-sector ATPase complex transmembrane transporter complex proton-transporting V-type ATPase, V0 domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth N]	IPR040574	V-type ATP synthase subunit I, N-terminal	Domain
A [auth N]	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family	Family
A [auth N]	IPR041276	Vacuolar ATPase subunit I, N-terminal proximal lobe	Domain
B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	IPR000245	V-ATPase proteolipid subunit	Family
B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], B [auth O], C [auth P], D [auth Q], E [auth R], F [auth S], G [auth T], H [auth U], I [auth V], J [auth W], K [auth X], L [auth Y], M [auth Z]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.