☰ Navigation Tabs
Crystal structure of murine AIF bound to N-terminal domain of CHCHD4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GD4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 20% PEG 6k, 100 mM Tris-HCl pH 8.0
Crystal Properties Matthews coefficient Solvent content 3.04 59.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.087 α = 90 b = 115.619 β = 90 c = 192.727 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2022-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.96546 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.206 99.146 93.6 0.303 0.315 0.086 0.996 7.6 13.2 24919
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.206 3.483 64.6 1.878 1.951 0.525 0.656 1.6 13.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.206 99.146 24919 1236 60.652 0.235 0.2325 0.2298 0.2844 0.2786 RANDOM 76.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.107 -2.913 -0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.478 r_dihedral_angle_6_deg 15.143 r_dihedral_angle_2_deg 7.763 r_dihedral_angle_1_deg 5.535 r_lrange_it 4.461 r_lrange_other 4.461 r_chiral_restr_other 1.537 r_angle_refined_deg 1.204 r_dihedral_angle_other_2_deg 0.965 r_angle_other_deg 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.478 r_dihedral_angle_6_deg 15.143 r_dihedral_angle_2_deg 7.763 r_dihedral_angle_1_deg 5.535 r_lrange_it 4.461 r_lrange_other 4.461 r_chiral_restr_other 1.537 r_angle_refined_deg 1.204 r_dihedral_angle_other_2_deg 0.965 r_angle_other_deg 0.67 r_symmetry_xyhbond_nbd_refined 0.607 r_nbd_other 0.288 r_symmetry_nbd_refined 0.238 r_symmetry_nbd_other 0.228 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.182 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.05 r_symmetry_xyhbond_nbd_other 0.023 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14227 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 388
Software Software Software Name Purpose REFMAC refinement XDS data reduction STARANISO data scaling MOLREP phasing