7ZVI

Non-canonical Staphylococcus aureus pathogenicity island repression

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		288	0.1 M Tris-HCl pH 8.5, 22 % PEG350

Crystal Properties
Matthews coefficient	Solvent content
3.57	65.57

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 88.218	α = 90
b = 88.218	β = 90
c = 110.489	γ = 120

Symmetry
Space Group	P 32 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	288	PIXEL	DECTRIS PILATUS 6M-F		2018-09-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.915	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.973	62.919	83.7	0.999	12.3	9.8		8900

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.973	3.167			0.487

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7P4A	2.973	62.919	8900	415	83.623	0.251	0.2488	0.295	97.47

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.022	0.011		0.022		-0.072

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.623
r_dihedral_angle_3_deg	15.361
r_dihedral_angle_4_deg	11.276
r_lrange_it	7.689
r_lrange_other	7.688
r_dihedral_angle_1_deg	6.308
r_mcangle_other	4.656
r_mcangle_it	4.654
r_scangle_it	3.98
r_scangle_other	3.979
r_mcbond_it	2.726
r_mcbond_other	2.702
r_scbond_it	2.225
r_scbond_other	2.224
r_angle_refined_deg	1.154
r_angle_other_deg	1.036
r_symmetry_xyhbond_nbd_refined	0.225
r_nbd_refined	0.188
r_nbd_other	0.169
r_symmetry_nbd_other	0.167
r_nbtor_refined	0.165
r_symmetry_nbd_refined	0.138
r_xyhbond_nbd_refined	0.134
r_symmetry_nbtor_other	0.071
r_chiral_restr	0.037
r_bond_refined_d	0.002
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2424
Nucleic Acid Atoms
Solvent Atoms	2
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
AutoProcess	data scaling
PHASER	phasing