7P4A

Non-canonical Staphylococcus aureus pathogenicity island repression.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.343 
  • R-Value Work: 0.298 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Non-canonical Staphylococcus aureus pathogenicity island repression.

Miguel-Romero, L.Alqasmi, M.Bacarizo, J.Tan, J.A.Cogdell, R.J.Chen, J.Byron, O.Christie, G.E.Marina, A.Penades, J.R.

(2022) Nucleic Acids Res 50: 11109-11127

  • DOI: https://doi.org/10.1093/nar/gkac855
  • Primary Citation of Related Structures:  
    7P4A, 7ZVI

  • PubMed Abstract: 

    Mobile genetic elements control their life cycles by the expression of a master repressor, whose function must be disabled to allow the spread of these elements in nature. Here, we describe an unprecedented repression-derepression mechanism involved in the transfer of Staphylococcus aureus pathogenicity islands (SaPIs). Contrary to the classical phage and SaPI repressors, which are dimers, the SaPI1 repressor StlSaPI1 presents a unique tetrameric conformation never seen before. Importantly, not just one but two tetramers are required for SaPI1 repression, which increases the novelty of the system. To derepress SaPI1, the phage-encoded protein Sri binds to and induces a conformational change in the DNA binding domains of StlSaPI1, preventing the binding of the repressor to its cognate StlSaPI1 sites. Finally, our findings demonstrate that this system is not exclusive to SaPI1 but widespread in nature. Overall, our results characterize a novel repression-induction system involved in the transfer of MGE-encoded virulence factors in nature.


  • Organizational Affiliation

    MRC Centre for Molecular Bacteriology and Infection, Imperial College London, SW7 2AZ, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
StlA,
C [auth B]
247Staphylococcus aureusMutation(s): 0 
UniProt
Find proteins for O54475 (Staphylococcus aureus)
Explore O54475 
Go to UniProtKB:  O54475
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO54475
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SriB [auth E],
D
52Staphylococcus aureusMutation(s): 0 
Gene Names: E4U00_01835G6X37_04850G6Y24_00280GO782_16265GO810_08430SAMEA103891454_02805
UniProt
Find proteins for A0A659I9D5 (Staphylococcus aureus)
Explore A0A659I9D5 
Go to UniProtKB:  A0A659I9D5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A659I9D5
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A,
C [auth B]
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.343 
  • R-Value Work: 0.298 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.211α = 90
b = 100.211β = 90
c = 298.688γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata scaling
iMOSFLMdata reduction
Cootmodel building
CRANK2phasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S003835/1

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-27
    Type: Initial release
  • Version 1.1: 2022-10-19
    Changes: Database references
  • Version 1.2: 2022-11-16
    Changes: Database references