7PLL

Structure of the murine cortactin C-SH3 domain in complex with a Pyk2 proline-rich ligand


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
22D 1H-1H NOESY0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
31H-15N HSQC0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
43D HNCACB0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
52D 1H-1H TOCSY0.8 mM 2H,13C,15N cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide100% D2O123 mM6.51 atm296Bruker DRX700 700
62D 1H-1H NOESY0.8 mM 2H,13C,15N cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide100% D2O123 mM6.51 atm296Bruker DRX700 700
72D 1H-1H COSY0.8 mM 2H,13C,15N cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide100% D2O123 mM6.51 atm296Bruker DRX700 700
83D 12C13C filtered-edited NOESY0.8 mM 2H,13C,15N cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide100% D2O123 mM6.51 atm296Bruker DRX700 700
92D 1H-1H TOCSY0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
102D 1H-1H NOESY0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
112D 1H-1H TOCSY0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide100% D2O123 mM6.51 atm296Bruker DRX700 700
122D 1H-1H NOESY0.8 mM cortactin C-terminal SH3 domain, 0.8 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide100% D2O123 mM6.51 atm296Bruker DRX700 700
132D 1H-1H TOCSY0.5 mM Pyk2-PRR2 peptide, 30 mM sodium phosphate, 0.01 % w/v sodium azide93% H2O/7% D2O123 mM6.51 atm296Bruker DRX700 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX700700
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCNS1.3Brunger, Adams, Clore, Gros, Nilges and Read
2structure calculationTALOS+Shen, Grishaev, Bax
3chemical shift assignmentTopSpin3.6.1Bruker Biospin
4refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
5peak pickingTopSpin3.6.1Bruker Biospin