7NWN

A carbohydrate binding module family 9 (CBM9) from Caldicellulsiruptor kristjanssonii


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M phosphate-citrate and 40% polyethylene glycol 300
Crystal Properties
Matthews coefficientSolvent content
4.3571.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 172.671α = 90
b = 172.671β = 90
c = 172.671γ = 90
Symmetry
Space GroupI 4 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX1.00003MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9746.191100126.8179.931213
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.972.110.76

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1I8U1.9746.19131206151999.9620.1830.18040.230146.697
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.336
r_dihedral_angle_4_deg16.689
r_dihedral_angle_3_deg15.002
r_lrange_it10.38
r_dihedral_angle_1_deg7.831
r_scangle_it7.418
r_mcangle_it6.282
r_scbond_it5.84
r_mcbond_it4.483
r_angle_refined_deg1.811
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.336
r_dihedral_angle_4_deg16.689
r_dihedral_angle_3_deg15.002
r_lrange_it10.38
r_dihedral_angle_1_deg7.831
r_scangle_it7.418
r_mcangle_it6.282
r_scbond_it5.84
r_mcbond_it4.483
r_angle_refined_deg1.811
r_nbtor_refined0.314
r_nbd_refined0.22
r_symmetry_nbd_refined0.214
r_xyhbond_nbd_refined0.15
r_symmetry_xyhbond_nbd_refined0.145
r_metal_ion_refined0.136
r_chiral_restr0.123
r_bond_refined_d0.013
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1575
Nucleic Acid Atoms
Solvent Atoms140
Heterogen Atoms97

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXphasing