7E5V

Crystal structure of Phm7 in complex with inhibitor

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7	293	1.54-1.62M Ammonium sulfate, 0.1M Tris HCl, 14-19% (v/v) Glycerol

Crystal Properties
Matthews coefficient	Solvent content
2.68	54.16

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 91.052	α = 90
b = 149.881	β = 97.119
c = 99.27	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2018-07-31	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SPRING-8 BEAMLINE BL32XU	1.000000	SPring-8	BL32XU

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.61	45.216	99.82	0.996	12.59	3.5		169791

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.61	1.668			0.838

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	Phm7	1.61	45.216	169790	8514	99.827	0.184	0.1828	0.2106	25.514

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.004		-0.002	0.001		-0.004

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.296
r_dihedral_angle_4_deg	19.338
r_dihedral_angle_3_deg	12.564
r_dihedral_angle_1_deg	7.901
r_lrange_it	6.962
r_lrange_other	6.884
r_scangle_it	5.112
r_scangle_other	5.107
r_mcangle_it	3.827
r_mcangle_other	3.827
r_scbond_it	3.447
r_scbond_other	3.445
r_mcbond_it	2.541
r_mcbond_other	2.541
r_angle_refined_deg	1.775
r_angle_other_deg	1.496
r_nbd_other	0.206
r_nbd_refined	0.199
r_symmetry_nbd_refined	0.193
r_symmetry_nbd_other	0.192
r_nbtor_refined	0.173
r_xyhbond_nbd_refined	0.152
r_symmetry_xyhbond_nbd_refined	0.128
r_symmetry_nbtor_other	0.094
r_chiral_restr	0.087
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_symmetry_xyhbond_nbd_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8470
Nucleic Acid Atoms
Solvent Atoms	792
Heterogen Atoms	192

Software

Software
Software Name	Purpose
XDS	data reduction
XDS	data scaling
pointless	data scaling
Aimless	data scaling
MLPHARE	phasing
Coot	model building
REFMAC	refinement
PHENIX	refinement