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Crystal structure of tetra-tandem repeat in extending RTX adhesin from Aeromonas hydrophila
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 4.6 294 PEG 20,000, sodium acetate
Crystal Properties Matthews coefficient Solvent content 3.15 61.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.67 α = 97.555 b = 50.37 β = 98.244 c = 124.6 γ = 101.719
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE ultra-low expansion titanium siliicate flat mirror 2016-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 48.64 97.3 0.081 0.094 0.048 0.998 10 3.9 108730 21.075
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 95.3 0.83 0.96 0.483 0.859 1.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 48.638 108706 5436 97.26 0.183 0.1812 0.1958 0.2098 0.2227 25.274
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.474 -1.677 -1.366 -1.162 -2.253 2.643
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.508 r_dihedral_angle_3_deg 10.45 r_dihedral_angle_1_deg 7.402 r_lrange_it 6.058 r_lrange_other 5.594 r_scangle_it 4.383 r_scangle_other 4.382 r_scbond_it 2.991 r_scbond_other 2.991 r_mcangle_it 2.876
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.508 r_dihedral_angle_3_deg 10.45 r_dihedral_angle_1_deg 7.402 r_lrange_it 6.058 r_lrange_other 5.594 r_scangle_it 4.383 r_scangle_other 4.382 r_scbond_it 2.991 r_scbond_other 2.991 r_mcangle_it 2.876 r_mcangle_other 2.876 r_mcbond_it 2.147 r_mcbond_other 2.145 r_angle_refined_deg 1.574 r_angle_other_deg 1.539 r_nbd_refined 0.248 r_symmetry_nbd_refined 0.216 r_symmetry_nbd_other 0.195 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.177 r_nbtor_refined 0.152 r_symmetry_xyhbond_nbd_refined 0.15 r_metal_ion_refined 0.126 r_symmetry_nbtor_other 0.089 r_ncsr_local_group_1 0.078 r_chiral_restr 0.068 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6012 Nucleic Acid Atoms Solvent Atoms 974 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling AutoSol phasing PHENIX model building BUCCANEER model building Coot model building