6X6B

Structure of the sulfate-bound form of ArrX from Chrysiogenes arsenatis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5289.150.2 M lithium sulfate, 0.1 M Tris pH 8.5, 25% (w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
1.8433.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.8α = 90
b = 53.2β = 90
c = 89.84γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-01-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.97949DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6745.799.40.99710.112.929902
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.671.710.524

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6ESK1.6745.728407144799.2750.1760.17470.204330.458
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.1260.8170.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.402
r_dihedral_angle_3_deg13.647
r_dihedral_angle_4_deg13.272
r_dihedral_angle_1_deg5.938
r_lrange_it5.156
r_lrange_other5.155
r_scangle_it3.915
r_scangle_other3.914
r_scbond_it2.603
r_scbond_other2.601
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.402
r_dihedral_angle_3_deg13.647
r_dihedral_angle_4_deg13.272
r_dihedral_angle_1_deg5.938
r_lrange_it5.156
r_lrange_other5.155
r_scangle_it3.915
r_scangle_other3.914
r_scbond_it2.603
r_scbond_other2.601
r_mcangle_it2.282
r_mcangle_other2.281
r_mcbond_it1.582
r_mcbond_other1.582
r_angle_refined_deg1.366
r_angle_other_deg1.312
r_symmetry_xyhbond_nbd_refined0.448
r_xyhbond_nbd_refined0.202
r_nbd_refined0.191
r_nbd_other0.179
r_symmetry_nbd_refined0.178
r_symmetry_nbd_other0.17
r_nbtor_refined0.166
r_symmetry_nbtor_other0.079
r_xyhbond_nbd_other0.074
r_chiral_restr0.073
r_symmetry_xyhbond_nbd_other0.072
r_gen_planes_refined0.007
r_bond_refined_d0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2020
Nucleic Acid Atoms
Solvent Atoms182
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing