6ESK

Structure of the apo form of AioX from Rhizobium sp. str. NT-26


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A new family of periplasmic-binding proteins that sense arsenic oxyanions.

Badilla, C.Osborne, T.H.Cole, A.Watson, C.Djordjevic, S.Santini, J.M.

(2018) Sci Rep 8: 6282-6282

  • DOI: https://doi.org/10.1038/s41598-018-24591-w
  • Primary Citation of Related Structures:  
    6ESK, 6ESV, 6EU7

  • PubMed Abstract: 

    Arsenic contamination of drinking water affects more than 140 million people worldwide. While toxic to humans, inorganic forms of arsenic (arsenite and arsenate), can be used as energy sources for microbial respiration. AioX and its orthologues (ArxX and ArrX) represent the first members of a new sub-family of periplasmic-binding proteins that serve as the first component of a signal transduction system, that's role is to positively regulate expression of arsenic metabolism enzymes. As determined by X-ray crystallography for AioX, arsenite binding only requires subtle conformational changes in protein structure, providing insights into protein-ligand interactions. The binding pocket of all orthologues is conserved but this alone is not sufficient for oxyanion selectivity, with proteins selectively binding either arsenite or arsenate. Phylogenetic evidence, clearly demonstrates that the regulatory proteins evolved together early in prokaryotic evolution and had a separate origin from the metabolic enzymes whose expression they regulate.


  • Organizational Affiliation

    Institute of Structural & Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative periplasmic phosphite-binding-like protein (Pbl) PtxB-like protein designated AioX266Pseudorhizobium banfieldiaeMutation(s): 0 
Gene Names: aioXNT26_p10026
UniProt
Find proteins for L0NML6 (Pseudorhizobium banfieldiae)
Explore L0NML6 
Go to UniProtKB:  L0NML6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL0NML6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.189 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 124.877α = 90
b = 124.877β = 90
c = 47.734γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
CONICYTChile--
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/N012674/1

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2019-10-16
    Changes: Data collection
  • Version 1.2: 2024-01-17
    Changes: Data collection, Database references, Refinement description